Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c10
         (199 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015236-1|AAH15236.1|  232|Homo sapiens DNA-damage-inducible tr...    29   2.1  
BC007714-1|AAH07714.1|  232|Homo sapiens DNA-damage-inducible tr...    29   2.1  
BC000708-1|AAH00708.1|  232|Homo sapiens DNA-damage-inducible tr...    29   2.1  
AY090097-1|AAM10442.1|  232|Homo sapiens REDD-1 protein.               29   2.1  
AL683820-1|CAH73863.1|  232|Homo sapiens HIF-1 responsive RTP801...    29   2.1  
AK000507-1|BAA91214.1|  232|Homo sapiens protein ( Homo sapiens ...    29   2.1  
AF335324-1|AAL38424.1|  232|Homo sapiens RTP801 protein.               29   2.1  

>BC015236-1|AAH15236.1|  232|Homo sapiens DNA-damage-inducible
           transcript 4 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>BC007714-1|AAH07714.1|  232|Homo sapiens DNA-damage-inducible
           transcript 4 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>BC000708-1|AAH00708.1|  232|Homo sapiens DNA-damage-inducible
           transcript 4 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>AY090097-1|AAM10442.1|  232|Homo sapiens REDD-1 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>AL683820-1|CAH73863.1|  232|Homo sapiens HIF-1 responsive RTP801
           (RTP801) protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>AK000507-1|BAA91214.1|  232|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20500 fis, clone KAT09159. ).
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


>AF335324-1|AAL38424.1|  232|Homo sapiens RTP801 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 59  WPKCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           WPK  G+F+ + + FLP  S +   +T  R+I   ++   Q +
Sbjct: 186 WPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLL 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,157,569
Number of Sequences: 237096
Number of extensions: 461051
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 76,859,062
effective HSP length: 44
effective length of database: 66,426,838
effective search space used: 1394963598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)