Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c10
         (199 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    27   2.4  
Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    26   4.2  
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    26   4.2  
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    26   4.2  
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    26   4.2  
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    26   4.2  
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    26   4.2  
U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine rece...    25   7.4  
AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 65  KCAGVFNGSLNDFLPXASVTNAATTNSRIISFMVFYIXQYM 187
           K  G+FNG+L  F+    V      N ++I F    I Q++
Sbjct: 14  KLIGIFNGALIGFILFLEVLLVILKNDKLIEFYNIGIFQWL 54


>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 186 IYCXI*NTMKLIILLFVVAAFVTLAXG-RKSLRDP 85
           +Y  +  TM+++++LF+  A+VT   G  K+  DP
Sbjct: 39  LYIHVLLTMRILLILFITVAYVTAFPGFPKTKWDP 73


>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19c protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19b protein.
          Length = 1118

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
            protein Y51A2D.19a protein.
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1c protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1049 QDNPYDGVVHNTTYGAMF 1066


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1b protein.
          Length = 1118

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1036 QDNPYDGVVHNTTYGAMF 1053


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conductance
            calcium-activatedpotassium channel SLO-1a protein.
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 145  QDNQLHGVLYSTIYGSLF 198
            QDN   GV+++T YG++F
Sbjct: 1058 QDNPYDGVVHNTTYGAMF 1075


>U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine
           receptor, class sx protein14 protein.
          Length = 330

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 168 NTMKLIILLFVVAAFVTL 115
           NT+K +ILLF++  F+T+
Sbjct: 216 NTLKYLILLFLMFRFITI 233


>AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical
           protein R02D3.5 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  NGSLNDFLPXASVTNAATTNSRIISFM 163
           N S  ++L    +TN  T+NS ++SF+
Sbjct: 222 NESAWNYLAGLLITNGVTSNSDVVSFV 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,539,460
Number of Sequences: 27780
Number of extensions: 71364
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)