Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c09
(790 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 357 1e-97
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 329 5e-89
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 295 6e-79
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 259 5e-68
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 227 2e-58
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 217 3e-55
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 200 4e-50
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 198 2e-49
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 193 4e-48
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 181 2e-44
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 169 7e-41
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 154 2e-36
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 131 2e-29
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 124 3e-27
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 123 4e-27
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 122 8e-27
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 118 2e-25
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 96 8e-19
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 88 3e-16
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 87 5e-16
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 86 1e-15
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 85 1e-15
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 84 4e-15
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 83 8e-15
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 77 4e-13
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 74 5e-12
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 71 3e-11
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 71 3e-11
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 70 6e-11
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 69 2e-10
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 66 9e-10
UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus... 65 2e-09
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 63 7e-09
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 62 1e-08
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 61 4e-08
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 60 6e-08
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 58 3e-07
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 54 4e-06
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 54 5e-06
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 46 0.001
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 44 0.003
UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2; Nanoar... 37 0.50
UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|R... 35 2.7
UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2; ... 34 3.5
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 4.7
UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
UniRef50_Q751J3 Cluster: Serine/threonine-protein kinase TEL1; n... 33 6.2
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 8.2
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 8.2
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 357 bits (879), Expect = 1e-97
Identities = 170/233 (72%), Positives = 199/233 (85%)
Frame = -2
Query: 756 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 577
GK K + KK +++ VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GL
Sbjct: 4 GKNKGVSKGGKKGSKKKV-VDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGL 62
Query: 576 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 397
KGRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQT
Sbjct: 63 KGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQT 122
Query: 396 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 217
LIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM II R++T++
Sbjct: 123 LIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITST 182
Query: 216 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
+L+ VV KL+PDSIAKDIEKAC +YPL DV IRKVKVLK+PRF++S LMELH
Sbjct: 183 DLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELH 235
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 329 bits (808), Expect = 5e-89
Identities = 159/233 (68%), Positives = 190/233 (81%)
Frame = -2
Query: 756 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 577
GK K + KK +++ VDPF++KDWYDVKAP+MF+ R +G TLV RTQGTKIAS+GL
Sbjct: 4 GKNKRLTKGGKKGAKKKV-VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGL 62
Query: 576 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 397
KGRVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHGMDLT DK+ MVKKWQT
Sbjct: 63 KGRVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQT 119
Query: 396 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 217
+IEA++DVKTTDGY+LR+FC+GFT K + RKT YAQH QVR IRKKM EI+TR+V +
Sbjct: 120 MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTN 179
Query: 216 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
+L+EVVNKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH
Sbjct: 180 DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELH 232
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape)
Length = 656
Score = 295 bits (725), Expect = 6e-79
Identities = 140/213 (65%), Positives = 172/213 (80%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
++RK RL AE VQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FC
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 157
I FT K +KTCYAQ +Q+R IR+KM EI+T T+ +L+E+V K IP+SI ++IEK
Sbjct: 535 IAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEK 594
Query: 156 ACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
A IYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 595 ATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVH 627
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 259 bits (635), Expect = 5e-68
Identities = 127/233 (54%), Positives = 171/233 (73%)
Frame = -2
Query: 756 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 577
GK K + KK L+++ DPF RKDWY +KAP+ F+ R VG TLVNR+ G K A++ L
Sbjct: 4 GKNKRLSKG-KKGLKKKTQ-DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDAL 61
Query: 576 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 397
KGR+FEVSLADLQ D D +FRK +L + VQG+N L NFHG+D T+DKLR +V+KWQ+
Sbjct: 62 KGRIFEVSLADLQKDED--HAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQS 119
Query: 396 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 217
LIEAN+ VKTTD Y+LR+F I T + +KT YA +Q+RAIR+KM EII R+ +
Sbjct: 120 LIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTC 179
Query: 216 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
L+++ NKLIP+ I ++IEKA GIYPL++V IRKVK+LK+P+F++ L+ LH
Sbjct: 180 TLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALH 232
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 227 bits (555), Expect = 2e-58
Identities = 122/232 (52%), Positives = 163/232 (70%), Gaps = 18/232 (7%)
Frame = -2
Query: 699 VDPFTRKDWYDVKAPSMFSK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 532
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 531 TDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 352
D + FRK +L AE V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 351 LRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----- 187
LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L+ VV+ LI
Sbjct: 134 LRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLN 193
Query: 186 ---------PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
++A+ I I+P+ +V IRKVKVLK P+ + +KL EL+
Sbjct: 194 GVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELY 245
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 217 bits (530), Expect = 3e-55
Identities = 105/226 (46%), Positives = 152/226 (67%), Gaps = 3/226 (1%)
Frame = -2
Query: 726 KKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA 547
KK ++R +DP +RK+WYD +AP FS + G TLV ++ G +IASE +KGRV E +LA
Sbjct: 15 KKGAKKR-TIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLA 73
Query: 546 DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 367
DL+ D ++++RK +L+ + V GRN +F+G+D+T D+L M++KWQTLIEA +D KT
Sbjct: 74 DLK-DNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKT 132
Query: 366 TDGYVLRVFCIGFTNKDSL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVN 196
DGY++RVF + FT K S S TCYA+ +QVRAIR+K+ IT + + E
Sbjct: 133 NDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSK 192
Query: 195 KLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
LI + K IEK I+PL+++ IRKVKVLKRP+ + +K+ EL+
Sbjct: 193 NLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 200 bits (487), Expect = 4e-50
Identities = 91/233 (39%), Positives = 149/233 (63%)
Frame = -2
Query: 756 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 577
GK K + K+ R + + RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L
Sbjct: 4 GKNKRISKGGKRGKRGKAQ-ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVL 62
Query: 576 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 397
+GRVFE +LADL E ++RK R + VQGRN+L FH M++TTDK+ +++KW T
Sbjct: 63 RGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCT 122
Query: 396 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 217
+E ++VKT DGY +R+F + FT + Q + CYA+ V+ +R ++ ++I R ++
Sbjct: 123 TMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKV 182
Query: 216 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
+++E V+ L + ++ + + C+ I PLR++ IRKV+V++ P+F+ L+ H
Sbjct: 183 QIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAH 235
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 198 bits (482), Expect = 2e-49
Identities = 90/214 (42%), Positives = 145/214 (67%)
Frame = -2
Query: 699 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 520
+DP RK+W+++ AP F+ G T +N++ GT +A+E +KGRV E SLADLQ +D +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 519 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 340
++RK +LI + V+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 339 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 160
I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++ +S+AK+I
Sbjct: 138 VIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQESLAKEIG 197
Query: 159 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
KA I+PL+++ +RKVK++KRP+ + KL E +
Sbjct: 198 KATRTIFPLQNITLRKVKLVKRPKVDAQKLREFY 231
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 193 bits (471), Expect = 4e-48
Identities = 107/227 (47%), Positives = 145/227 (63%), Gaps = 1/227 (0%)
Frame = -2
Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
+KD YDVKA +MF+ R +G T V R Q TK+ S GL G VFE SLA LQ D RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRK 68
Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
F+LI E ++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+T
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 324 -NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 148
N + R+ AQ+ QV I +I+ D ++L+EV+NKL+PD++ KD+EKAC
Sbjct: 128 TNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPDNVGKDVEKACQ 185
Query: 147 GIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSERP 7
IYPL DV +RKVK+L++P+ ++ KL ELH D+ E P
Sbjct: 186 FIYPLHDVFVRKVKILQKPKLDLGKLPELHALGLHGSHRKSDRYEPP 232
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 181 bits (440), Expect = 2e-44
Identities = 94/200 (47%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Frame = -2
Query: 759 SGKIKACRRA-VKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASE 583
+GK K + VKK +R+ +PF++K+WY+VK P F +R VG +VN+T GT+IASE
Sbjct: 3 TGKNKKYKAGNVKKGSKRKI-AEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASE 61
Query: 582 GLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 403
LKGRV EV+LADL + KF+ E V G++ L FHG+ LTTDKLR +VKKW
Sbjct: 62 QLKGRVVEVNLADLMENEKFGAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKW 119
Query: 402 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 223
TLIE ++DVKTTDG+++R+FCIGFT++ S +KT YA+ Q++ IRK M +IT++
Sbjct: 120 CTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAA 179
Query: 222 NSELREVVNKLIPDSIAKDI 163
+ EL + V+ L + K +
Sbjct: 180 SRELTQFVDYLKKTNFQKKL 199
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 169 bits (411), Expect = 7e-41
Identities = 79/152 (51%), Positives = 106/152 (69%)
Frame = -2
Query: 513 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 334
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 333 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKA 154
FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIPDSI +D
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNE 125
Query: 153 CHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
I+PL +RKVKVLK+P+ ++ +++ELH
Sbjct: 126 ASSIFPLSGALVRKVKVLKKPKLDLGRILELH 157
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 154 bits (374), Expect = 2e-36
Identities = 80/223 (35%), Positives = 124/223 (55%)
Frame = -2
Query: 726 KKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA 547
KK + +R N DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L
Sbjct: 10 KKKITQRKNPDPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLG 69
Query: 546 DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 367
DL + KF L + V L NFHGMD+T K + +K I+ +D+ T
Sbjct: 70 DLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPT 129
Query: 366 TDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 187
TDGY+LRVF I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 130 TDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLS 189
Query: 186 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
+ + +A I RDV IR+VKV+KRPR + L +H
Sbjct: 190 NFEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMH 232
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 131 bits (317), Expect = 2e-29
Identities = 72/131 (54%), Positives = 92/131 (70%)
Frame = -2
Query: 753 KIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 574
K K + KK +++ VDPF++KDWYDV AP+MF+ R +G TLV RTQGTKIAS+
Sbjct: 5 KNKRLTKGGKKGAKKKV-VDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD--- 60
Query: 573 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
GRVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHG+DLT+DK+ ++K
Sbjct: 61 GRVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMME 117
Query: 393 IEANIDVKTTD 361
I +V+T D
Sbjct: 118 IMTR-EVQTND 127
Score = 110 bits (264), Expect = 4e-23
Identities = 49/69 (71%), Positives = 60/69 (86%)
Frame = -2
Query: 264 IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 85
IRKKM EI+TR+V ++L+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 84 EISKLMELH 58
E+ KLMELH
Sbjct: 171 ELGKLMELH 179
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 124 bits (298), Expect = 3e-27
Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 1/208 (0%)
Frame = -2
Query: 711 RRCNVDPFTRKDWYDVKAPSMFS-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQA 535
++ D F +K+W V P+ F+ KR +G T+ N+ ++ + + RV+E+S AD+
Sbjct: 13 KKIKQDSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVN 72
Query: 534 DTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGY 355
D +R IA G V F GM LT DKL +++K++T+I+A++D KT DG+
Sbjct: 73 DLSHAYRLFSWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGF 129
Query: 354 VLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSI 175
+LR+F IGFT K + S + YA + R +R M + +T + + ++ + + I
Sbjct: 130 ILRLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKDFVDEKI 189
Query: 174 AKDIEKACHGIYPLRDVCIRKVKVLKRP 91
+I + C I + V I KVKV+K P
Sbjct: 190 ENEIVEKCKQICQIESVYITKVKVIKAP 217
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 123 bits (297), Expect = 4e-27
Identities = 63/207 (30%), Positives = 115/207 (55%)
Frame = -2
Query: 717 LRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 538
++ + N D +R++ V AP +F + +G TL+ + + + ++++VSLAD+
Sbjct: 12 IKNKKNQDVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADIL 70
Query: 537 ADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG 358
E S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DG
Sbjct: 71 GKE--EFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDG 128
Query: 357 YVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDS 178
Y L++F I + K + KT Y +Q RA+R+++ +II ++ N ++++ ++++
Sbjct: 129 YFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSLK 188
Query: 177 IAKDIEKACHGIYPLRDVCIRKVKVLK 97
I + IE C I+P+ V IRK+KV++
Sbjct: 189 IYEKIEINCSKIFPIHQVNIRKIKVVE 215
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 122 bits (295), Expect = 8e-27
Identities = 60/159 (37%), Positives = 98/159 (61%)
Frame = -2
Query: 573 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 393 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 214
IEA D+ DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ +
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCD 132
Query: 213 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 97
+++++ KL +++ K IE+ I+PL++ C+RKVK +K
Sbjct: 133 VQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 118 bits (283), Expect = 2e-25
Identities = 60/102 (58%), Positives = 76/102 (74%)
Frame = -2
Query: 735 RAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEV 556
R+ KK +++ VD ++KDWYD+KAP+MF+ R +G TLV RTQGTKIAS+GLKG VFE+
Sbjct: 11 RSSKKGAKKKA-VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEM 69
Query: 555 SLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 430
SLADLQ D E +FRKF+LI E VQG+ L NF M L+ D
Sbjct: 70 SLADLQND---EVAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 96.3 bits (229), Expect = 8e-19
Identities = 67/209 (32%), Positives = 107/209 (51%)
Frame = -2
Query: 699 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 520
VD F K+WY V AP+ F++ +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 519 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 340
FR+ E + G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 339 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 160
I T K A+ +Q+ +IR+ M ++ + E +N+++ +A +I
Sbjct: 120 PIVLTVK---------RARTSQIESIRQIMINVVNKRGAELGFTEFINEVVTGKVASEIY 170
Query: 159 KACHGIYPLRDVCIRKVKVLKRPRFEISK 73
K IYPLR V I K +++ RP +K
Sbjct: 171 KNTKNIYPLRRVEIGKSELVYRPAVAAAK 199
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 87.8 bits (208), Expect = 3e-16
Identities = 67/214 (31%), Positives = 111/214 (51%)
Frame = -2
Query: 732 AVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 553
A KKV R+ +D + K+WY+++AP+ ++ VGTT+ L GR E +
Sbjct: 2 ARKKVQRK---LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETT 51
Query: 552 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 373
+ +L D ++ K L V G + G +LTTD +R +VK+ + I+AN+DV
Sbjct: 52 VGELT--NDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDV 109
Query: 372 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 193
+T DG+V+RV FT K A+ +Q++AIR+ M +I+ + + ++ + +
Sbjct: 110 RTKDGFVIRVKPTCFTIK---------RARSSQMQAIREMMVDIVKKRASETDFETFMQE 160
Query: 192 LIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 91
I ++ I + IYPLR V IRK +V P
Sbjct: 161 AILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 87.0 bits (206), Expect = 5e-16
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
FR+ V+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIYD--VEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----PDSIAK 169
+ FT T A+ +Q RAIRK+M ++I + + E + + + +SI +
Sbjct: 115 LAFT---------TRRAKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPE 165
Query: 168 DIEKACHGIYPLRDVCIRKVKVLKRP 91
I++A IYP+R IRK +VL+ P
Sbjct: 166 QIKEAGRKIYPIRQAEIRKTEVLEEP 191
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 85.8 bits (203), Expect = 1e-15
Identities = 64/210 (30%), Positives = 102/210 (48%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
D + K WY + P FS +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 157
+ ++ S KT IRKK+ E +T E V +I D +++ K
Sbjct: 126 LTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSEYVKYIISDDAPRELSK 176
Query: 156 ACHGIYPLRDVCIRKVKVLKRPRFEISKLM 67
IYP+R + IRK +VL P +I +L+
Sbjct: 177 ELKVIYPVRRIEIRKSEVLHFPEEKIVELV 206
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 85.4 bits (202), Expect = 1e-15
Identities = 66/221 (29%), Positives = 104/221 (47%)
Frame = -2
Query: 753 KIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK 574
K KA + K + +R DP+ K W+ V APS + N Q L
Sbjct: 4 KQKAVAKQEKVAISKR---DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LL 53
Query: 573 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
R EVSL D+ D KF++ V+G L F G++LT D +R +V+K +
Sbjct: 54 MRTLEVSLYDITKDISHLPIKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSK 111
Query: 393 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 214
+ A +VKT DG V+R+ +G T + +K+ A+RKKM E + + +
Sbjct: 112 VTAITEVKTKDGMVMRIAVLGITTHRIGTAQKS---------AMRKKMIETLVKKAAELD 162
Query: 213 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 91
+ + +++ ++A D+ I P+R V I K+KVLK P
Sbjct: 163 SGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 83.8 bits (198), Expect = 4e-15
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 1/209 (0%)
Frame = -2
Query: 714 RRRCNV-DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 538
RR V D +T K W+ + AP F ++G T + +K+ GR E +LA+L
Sbjct: 5 RRAARVKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELT 57
Query: 537 ADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG 358
D + +++K V G N F +LT + L + ++ + IE +DV T DG
Sbjct: 58 NDYSNQNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADG 117
Query: 357 YVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDS 178
Y LRV + FT + + KT +Q RAIR M +I+ ++ + + + +
Sbjct: 118 YKLRVKSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGK 168
Query: 177 IAKDIEKACHGIYPLRDVCIRKVKVLKRP 91
+ +I K IYP+R V IRK+++L P
Sbjct: 169 VPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 83.0 bits (196), Expect = 8e-15
Identities = 43/70 (61%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Frame = -2
Query: 198 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD- 22
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH GD
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDE 60
Query: 21 ---KSERPEG 1
K ER EG
Sbjct: 61 TGAKVERAEG 70
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 77.4 bits (182), Expect = 4e-13
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 4/206 (1%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 8 DTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSYVH 60
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 61 VKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRVTA 118
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI----PDSIAK 169
+ FT R+ C + +Q AIRK M EI+ + S L E++ ++ S+A
Sbjct: 119 MAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVFSDHEGSLAY 169
Query: 168 DIEKACHGIYPLRDVCIRKVKVLKRP 91
I+++ IYPLR V I K K+L P
Sbjct: 170 LIDESARKIYPLRKVEIAKSKLLWVP 195
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 73.7 bits (173), Expect = 5e-12
Identities = 55/198 (27%), Positives = 92/198 (46%)
Frame = -2
Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
+K WY V AP F ++++G TL + + GR +L +L D+ A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
F++ V F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKITD--VGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 145
K A +Q +AIR+ M + + + V+ ++ +++ I
Sbjct: 123 TKK---------ADRSQEKAIRRVMIDKVHAAAEDRTFESFVDAIVEGNLSSAIYGDAKL 173
Query: 144 IYPLRDVCIRKVKVLKRP 91
IYPLR V I+K+ + RP
Sbjct: 174 IYPLRRVEIQKLTLEARP 191
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 71.3 bits (167), Expect = 3e-11
Identities = 51/198 (25%), Positives = 90/198 (45%)
Frame = -2
Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
+K WY V+AP F + +G T + + GR E +L +L D +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
F++ V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 145
K A +Q +AIR+ M +++ + ++++ ++ ++ I
Sbjct: 123 TKK---------ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKD 173
Query: 144 IYPLRDVCIRKVKVLKRP 91
IYPLR V I+K + RP
Sbjct: 174 IYPLRRVEIKKTTLEARP 191
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 70.9 bits (166), Expect = 3e-11
Identities = 57/206 (27%), Positives = 100/206 (48%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
D ++ K W V AP F +G L+ + K GR EVS D+ D
Sbjct: 9 DKWSMKKWIKVLAPKAFGFANLG--LIPADEPEKAL-----GRTVEVSFYDITKDVSQLH 61
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
KF+++ V L M++T D +R +V++ + ++A +DV+T DG +RV
Sbjct: 62 IKLKFQIVK--VDDGIALTQLKLMEMTRDYIRSLVRRGTSRVDAILDVQTKDGVKMRVMA 119
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 157
+ T +S+ KT +Q +AIR+ M +II+ + + + + + ++A +++
Sbjct: 120 LAVT----VSRIKT-----SQKKAIRRIMFDIISEKAASLDFDTFIQQAVIGTMATEMQM 170
Query: 156 ACHGIYPLRDVCIRKVKVLKRPRFEI 79
IYP++ V + K+KVL P EI
Sbjct: 171 QAKKIYPIKKVEVYKIKVL-TPTTEI 195
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 70.1 bits (164), Expect = 6e-11
Identities = 56/214 (26%), Positives = 94/214 (43%)
Frame = -2
Query: 738 RRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFE 559
R + +R D + K WYD+ P F +G T N L GR+ E
Sbjct: 3 RMKARSAKGKRVAKDTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISE 55
Query: 558 VSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 379
+SL DL + + F++ + V G N F G D T + L+ V++ ++ I A +
Sbjct: 56 ISLRDLTNEHSKHMTRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIV 113
Query: 378 DVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVV 199
+V+T DG+ +RV + T + KT IR +M +II + E V
Sbjct: 114 EVRTKDGFKVRVKALVLTAVRARDHHKT---------EIRVRMEQIIKEMAKETPFAEFV 164
Query: 198 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 97
+ ++ + I C ++PL+ V I K +V++
Sbjct: 165 HAMLMGGLGSKIYGDCKKMFPLKRVEIFKSEVIE 198
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 68.5 bits (160), Expect = 2e-10
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 1/209 (0%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
F+++ +G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRN--EGERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 336 IGFTNKDSLSQRKTCYAQH-TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 160
+ T Y H Q IRK M +++ + E V ++I ++A +I
Sbjct: 127 LAL----------TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLANNIF 176
Query: 159 KACHGIYPLRDVCIRKVKVLKRPRFEISK 73
I PLR I K KVL P + K
Sbjct: 177 NEAKKIAPLRKAEIEKSKVLFAPLIKEGK 205
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 66.1 bits (154), Expect = 9e-10
Identities = 54/209 (25%), Positives = 94/209 (44%)
Frame = -2
Query: 726 KKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA 547
K RRR D + K WY +K P F +++G T + L GR EV++
Sbjct: 3 KAKARRRVR-DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMR 54
Query: 546 DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKT 367
+L D + + K R + V G F G TTD +R M+++ + I+A+ VKT
Sbjct: 55 ELSGDFS--KQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKT 112
Query: 366 TDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLI 187
D +++ + T T A+ +Q + +R+ + +++ E++ ++
Sbjct: 113 KDDRKVKLHVLAVT---------TRRAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVV 163
Query: 186 PDSIAKDIEKACHGIYPLRDVCIRKVKVL 100
+A ++ IYPL+ V I K KVL
Sbjct: 164 NGKLASEVYHNAKKIYPLKRVEIIKSKVL 192
>UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S3Ae -
Methanoregula boonei (strain 6A8)
Length = 201
Score = 65.3 bits (152), Expect = 2e-09
Identities = 58/210 (27%), Positives = 94/210 (44%)
Frame = -2
Query: 732 AVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVS 553
A KK RR V+ + K W+ V P K +G T+ + E +KGR+ + +
Sbjct: 2 AKKKQAGRR--VEGWKAKSWFKVYTPDNLGKAYIGDTIASEV-------ETVKGRIMQAT 52
Query: 552 LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 373
L ++ D + F+ IAE V G F G ++T D LR +VK+ + I+ ++ V
Sbjct: 53 LGEITNDYAKQHIKMSFK-IAE-VTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQV 110
Query: 372 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 193
T D +R+ ++S A Q A+R + + +L +VN
Sbjct: 111 VTKDNKKVRL---------TISCYTFARANIAQEHALRNAITAGLVAQAQAWDLNTLVNG 161
Query: 192 LIPDSIAKDIEKACHGIYPLRDVCIRKVKV 103
++ I+KD+ K +YP R V I K KV
Sbjct: 162 VVSGEISKDLFKLVKTLYPTRRVEIIKSKV 191
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 63.3 bits (147), Expect = 7e-09
Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 1/201 (0%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSM-FSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 520
D + K WY ++AP ++ + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 519 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 340
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 339 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 160
+ T K Q + ++IR K +++ V + + ++ S+ +I+
Sbjct: 132 PLIITQK---------RVQTSVKQSIRAKTRDVLLGYVAKTTYDALQVAMLDGSLETEIQ 182
Query: 159 KACHGIYPLRDVCIRKVKVLK 97
IYP R V IRK ++L+
Sbjct: 183 NQIKTIYPCRSVVIRKSQLLQ 203
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 62.5 bits (145), Expect = 1e-08
Identities = 49/197 (24%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Frame = -2
Query: 699 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 520
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 519 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 343
F+++ V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 342 FCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 163
FT +A+ +QV+ +R KM +++ ++ V+ ++ ++K +
Sbjct: 123 TITAFTIN---------HARLSQVQELRAKMVKVVEDSAKEADFESFVSAMLKGELSKKM 173
Query: 162 EKACHGIYPLRDVCIRK 112
C I+P+R + I K
Sbjct: 174 FAECKPIFPVRRIEIIK 190
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 60.9 bits (141), Expect = 4e-08
Identities = 59/216 (27%), Positives = 93/216 (43%)
Frame = -2
Query: 735 RAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEV 556
+A + ++R + + K W V AP+ + + V+ S+ + GR E
Sbjct: 3 QAQQAATQQRIPLGKWAFKKWLTVYAPAFLGGQAIVEIPVDEP------SKAV-GRNVET 55
Query: 555 SLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANID 376
+L DL D +FR+ V L F+GM+LT D +R +V++ + + D
Sbjct: 56 TLYDLTKDLSHINVKLRFRVNG--VDDGRALTQFNGMELTRDYVRNLVRRGSSKVMVIKD 113
Query: 375 VKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVN 196
V T DG LR+ + T T T IRK + + + + S+ +V
Sbjct: 114 VTTKDGGKLRMEVLAIT---------TYRCTRTHKHLIRKSIMDRLDKVGQESDFDSLVR 164
Query: 195 KLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 88
I I D+ IYPLR V I K+KVL+ PR
Sbjct: 165 DSIMGKIQVDLFNVAKKIYPLRKVEIIKIKVLEYPR 200
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 60.1 bits (139), Expect = 6e-08
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
Frame = -2
Query: 681 KDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKF 502
K+W V AP +F + +G + N+ + + R EVSL++L D S+ K
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELINDYS---SYYKI 81
Query: 501 RLIAEYVQGRNVL-CNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
+ Y + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 82 IKLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YT 140
Query: 324 NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHG 145
+L Y + +++R I ++ I + + N + + D I I++
Sbjct: 141 ITKNLHSNSITYGKRSRIRKINRESILCIKKMLENKPIDFIYKICCSDVIGNSIKRRSKR 200
Query: 144 IYPLRDVCIRKVK 106
+ P+++ I ++K
Sbjct: 201 VIPIKNFIISRIK 213
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 57.6 bits (133), Expect = 3e-07
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 1/202 (0%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADTDAE 520
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIALS--------PAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 519 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 340
+ FR+ + G+ F G ++ D +R MV++ + I+ + KT DGY L V
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL-VI 119
Query: 339 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 160
I + L+ K +R K+ I + L E+ +I D++ DI
Sbjct: 120 KIVLVSDSKLTANKR--------GEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIV 171
Query: 159 KACHGIYPLRDVCIRKVKVLKR 94
+YP++ + IRK +VL R
Sbjct: 172 DTLKDVYPIKKIEIRKSEVLGR 193
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 54.0 bits (124), Expect = 4e-06
Identities = 52/213 (24%), Positives = 91/213 (42%)
Frame = -2
Query: 696 DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAER 517
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 516 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 337
FR+ +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRITN--CEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 336 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 157
+ T+ + +K IRK + + I + E V LI D I D+
Sbjct: 123 VVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMIS 173
Query: 156 ACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 58
A IYPL+ + +RK +++ +S + E+H
Sbjct: 174 ATKDIYPLKKIEVRKSELV-----SLSGISEIH 201
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 53.6 bits (123), Expect = 5e-06
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 1/216 (0%)
Frame = -2
Query: 714 RRRCNV-DPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 538
RR+ V D + K W + AP F+ V V T + KGRV EV+L D+
Sbjct: 3 RRKIKVKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDIL 55
Query: 537 ADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG 358
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DG
Sbjct: 56 KGDPQQNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDG 114
Query: 357 YVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDS 178
YV R+ + T + + +K A+R + ++I V + + V
Sbjct: 115 YVFRLKVLALTYRHLNTSKK---------HALRLIIRDVIENTVPQMNIDQFVQAACYGK 165
Query: 177 IAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 70
I DI + +R + + KVK+++ +I+ L
Sbjct: 166 INSDILSRAKKLVKVRHMGLEKVKLVRTAEEQITLL 201
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/74 (35%), Positives = 43/74 (58%)
Frame = +1
Query: 475 SLHIFGD*SEFAERPFRVSVSL*ISQGNFENSSLQSFRSNFRSLGTVDKRGADLPLAEHR 654
SLH+ G S+ + + L ISQGN ++S L+ FR + S + +K A++ AE R
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 655 RSLDIVPIFASEWV 696
R L+++P+ S+ V
Sbjct: 119 RRLNVIPVLLSKRV 132
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = -2
Query: 756 GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTT 622
GK K + KK +++ +D F++KDWYDVKA +MF+ R +G T
Sbjct: 4 GKNKCFMKGSKKGAKKKV-IDQFSKKDWYDVKALAMFNIRNIGKT 47
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = -2
Query: 132 RDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD----KSERPEG 1
R +C++KVK+LK+P+FE+ KLMELH GD K ER EG
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEG 110
>UniRef50_Q74N14 Cluster: 30S ribosomal protein S3Ae; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3Ae -
Nanoarchaeum equitans
Length = 198
Score = 37.1 bits (82), Expect = 0.50
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Frame = -2
Query: 684 RKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRK 505
RK W+ +KAP++F++ ++G T + E + GR E+++A + + +
Sbjct: 12 RKIWFTIKAPAIFNEVELGETPAYK-------PEQVIGRRVELNMALVTNNYQLQNYKGI 64
Query: 504 FRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 325
F++ V+G G+ + ++ V+ + I + +K D ++RV + T
Sbjct: 65 FKITK--VEGTTAKTELEGIKMYESIIQKWVEPGRDKITDSFVIKDKDNRLVRVKPVLIT 122
Query: 324 NKDSLSQRKTCYAQHTQVRAI-RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACH 148
N R+ Q T +R I R E+ + + +++NK IP+ + I+K
Sbjct: 123 N------RRLHRKQGTAIRNIWRNYFVELGKKLSFEDMVMKILNKEIPEQLKIQIKK--- 173
Query: 147 GIYPLRDVCIRK 112
IYP IR+
Sbjct: 174 -IYPPLFFAIRQ 184
>UniRef50_Q87BL9 Cluster: DNA helicase; n=5; Xylella fastidiosa|Rep:
DNA helicase - Xylella fastidiosa (strain Temecula1 /
ATCC 700964)
Length = 1190
Score = 34.7 bits (76), Expect = 2.7
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = -2
Query: 717 LRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQ 538
++R+C+ D W + + + Q T + A GL +VSLAD
Sbjct: 549 MQRQCD-DRLQEHSWAVTRGEKVLHEEQCHITTWQAALAKESALTGLMEAAGQVSLADCD 607
Query: 537 ADTDAERSFRKFRLIAEYVQGR 472
A D FR F L Y +GR
Sbjct: 608 ALADTSIRFRIFLLTTHYWEGR 629
>UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2;
cellular organisms|Rep: Surface repeat protein, putative
- Roseobacter sp. AzwK-3b
Length = 5954
Score = 34.3 bits (75), Expect = 3.5
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 1 ALRPFRLVSGFPLASTAFAVKFHQLR-DLETGPLQHFHLSDANIAQRVDAMAGLLDVLGN 177
AL RL + P+ V QL D+ TGP+ H + D Q V A GL+D+ GN
Sbjct: 5486 ALSVLRLGALVPVGPDGLGVALDQLDLDVTTGPV-HLNERDGIDLQSVIARDGLIDIFGN 5544
Query: 178 GV 183
G+
Sbjct: 5545 GL 5546
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 4.7
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 377 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 541
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_Q4P2U9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 3702
Score = 33.5 bits (73), Expect = 6.2
Identities = 27/106 (25%), Positives = 52/106 (49%)
Frame = -2
Query: 480 QGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQR 301
Q ++ CN G+D+ D+++ V + +ID D VF G D+L R
Sbjct: 517 QAFDLFCNARGLDVLVDRIKAEVNR-------DIDDGAADRMSDSVF--GEPGPDNLYGR 567
Query: 300 KTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDI 163
+ + + + +R++ K + +++ T LR +VN +PDS+ + I
Sbjct: 568 LS-FGRASLLRSMFKTITQMMASTGTGDGLRNLVNTSLPDSLKRII 612
>UniRef50_Q751J3 Cluster: Serine/threonine-protein kinase TEL1; n=2;
Eukaryota|Rep: Serine/threonine-protein kinase TEL1 -
Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 2768
Score = 33.5 bits (73), Expect = 6.2
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +2
Query: 71 NFEISKRGLFNTFTFRMQTSRRG*MPWQAFSMSLAMESGINLFTTSLSSELVTSRVMISH 250
N + GLF TF RM T + M W ++++ +L T LSS L+ +R
Sbjct: 2010 NSSVEHYGLFKTFARRMSTIQSAKMLWSQNETVMSIDMLKDLLHTPLSSNLI-ARARKQP 2068
Query: 251 IFFLIALT*VCWA*HVLRWLKES 319
F +A+ + +++WL S
Sbjct: 2069 FFQQMAILDINVKAQLVQWLSHS 2091
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 8.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 226 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 333
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 8.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 428 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 601
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 602 PWVR 613
WVR
Sbjct: 522 QWVR 525
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,504,497
Number of Sequences: 1657284
Number of extensions: 16543089
Number of successful extensions: 49162
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 47188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49114
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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