Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c08
(842 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 0.22
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 27 0.22
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 25 0.87
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.87
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 25 0.87
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 25 0.87
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 23 3.5
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 23 3.5
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 3.5
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 22 6.2
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 27.1 bits (57), Expect = 0.22
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 212 LDLRNSRTSRSDSGPVLGSIK-HTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLIS 385
LDLRN+ R +S L HT+ LS N+ + + + G+ LN + + N++ S
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELS-DNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 27.1 bits (57), Expect = 0.22
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 325 CRGQWHVAIRSRQHDCVLDRPQHGA--AVRTRGARIAQI 215
C G + V + S + LD P H A ++R RGA I I
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRGAHITDI 219
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 25.0 bits (52), Expect = 0.87
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 567 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 457
K Q + KP + +V N G IFLG YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.0 bits (52), Expect = 0.87
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 459 DYGVKSPNAAS-TSSNVTMTRGTAN 388
+Y + +AAS TSS V +TRGT N
Sbjct: 6 NYALDVSSAASKTSSKVMLTRGTVN 30
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 25.0 bits (52), Expect = 0.87
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 567 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 457
K Q + KP + +V N G IFLG YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 25.0 bits (52), Expect = 0.87
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 567 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 457
K Q + KP + +V N G IFLG YD
Sbjct: 113 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 149
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.0 bits (47), Expect = 3.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 332 VGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-GDL 448
+G +P+N IN+ L I ++ +LL ++ A+ GD+
Sbjct: 72 IGSVPVNNINLILLQNIIDICWITMVYSLLGIIIAYTGDV 111
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 23.0 bits (47), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 740 SKTINNTIFHMICFNLQFQFPMRFRLCKCF 829
+ IN I+ + F+ F+F + +CKCF
Sbjct: 54 NSAINPCIYAL--FSKDFRFAFKSIICKCF 81
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 23.0 bits (47), Expect = 3.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 740 SKTINNTIFHMICFNLQFQFPMRFRLCKCF 829
+ IN I+ + F+ F+F + +CKCF
Sbjct: 502 NSAINPCIYAL--FSKDFRFAFKSIICKCF 529
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 22.2 bits (45), Expect = 6.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -3
Query: 702 LNSLTEASPSLGQSSESVESDENK----RLNVKLNNARVANLR 586
++SL E SS SVE EN+ LN + + R+ +LR
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLR 368
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,062
Number of Sequences: 438
Number of extensions: 5217
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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