Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c07
(867 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase prot... 391 e-111
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 25 0.77
AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein. 25 0.77
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 25 0.77
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 25 1.0
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 23 4.1
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 23 4.1
X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Triboliu... 22 7.2
U04271-1|AAA03708.1| 490|Tribolium castaneum alpha-amylase I pr... 22 7.2
DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein. 21 9.5
AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5 prot... 21 9.5
>AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase protein.
Length = 590
Score = 391 bits (963), Expect = e-111
Identities = 187/228 (82%), Positives = 208/228 (91%)
Frame = -2
Query: 827 TIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVR 648
TIEHLLPLFLTQLKDECPEVRLNIISNL+CVNEVIGIQQL QSLLPAIVELAED+KWRVR
Sbjct: 363 TIEHLLPLFLTQLKDECPEVRLNIISNLDCVNEVIGIQQLSQSLLPAIVELAEDSKWRVR 422
Query: 647 LAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAEN 468
AIIE+MPLLAGQLG+EFFDEKL +LCM+WL+DHV+AIREAATLNL+KLV+Q+G +WAE
Sbjct: 423 SAIIEYMPLLAGQLGREFFDEKLNALCMTWLMDHVFAIREAATLNLRKLVDQFGAEWAET 482
Query: 467 NVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNV 288
+IPKVL MS +QNYL+RMT LFCINVL+E CG DITTR+LLPTVLSMA+D VANVRFNV
Sbjct: 483 TIIPKVLAMSRDQNYLYRMTCLFCINVLAEACGSDITTRLLLPTVLSMANDKVANVRFNV 542
Query: 287 AKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEAIAGIAG 144
AKTLQ +A LD AVIQPQVKPVL+KL D D+DVKY ASEAIAGIAG
Sbjct: 543 AKTLQKIAPQLDQAVIQPQVKPVLDKLTADSDIDVKYSASEAIAGIAG 590
Score = 66.1 bits (154), Expect = 3e-13
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 4/228 (1%)
Frame = -2
Query: 815 LLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAII 636
L+P+FL+ +DE VRL + + + + ++P + DT WRVR +
Sbjct: 207 LIPMFLSLTQDEQDSVRLLAVEACVSFASLFQQEDIEMFVMPTVRNCTGDTSWRVRYMVA 266
Query: 635 EHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAE----N 468
+ L +G E L + L D +R AA +K + E N
Sbjct: 267 DKFTDLQKAVGPEITRTDLVPAFQNLLKDTEAEVRAAAANKVKDFCQNLDKAHQESIIMN 326
Query: 467 NVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNV 288
N++P V + + N + I LS + G+ T LLP L+ D VR N+
Sbjct: 327 NILPCVKELVADPNQHVKSALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNI 386
Query: 287 AKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEAIAGIAG 144
L + + + + + P + +L D V+ E + +AG
Sbjct: 387 ISNLDCVNEVIGIQQLSQSLLPAIVELAEDSKWRVRSAIIEYMPLLAG 434
Score = 53.2 bits (122), Expect = 3e-09
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 3/245 (1%)
Frame = -2
Query: 812 LPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIE 633
+ + + +LK+E ++RLN I L + +G+++ L+P + E D V LA+ E
Sbjct: 15 IAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTRSELIPFLTETIYDED-EVLLALAE 73
Query: 632 HMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPK 453
+ +G + L S +R+ A +L+ + +Q+ P EN+ +P
Sbjct: 74 QLGSFITLVGGPEYAYCLLPPLESLATVEETVVRDKAVESLRAVAQQHSPADLENHFVPL 133
Query: 452 VLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRV---LLPTVLSMADDNVANVRFNVAK 282
V +S + R + C L VC ++ ++ L ++ D+ VR A
Sbjct: 134 VQRLSAGDWFTSRTS--AC--GLFSVCYPRVSAQMKADLRSHFRALCQDDTPMVRRAAAT 189
Query: 281 TLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEAIAGIAG*LILNNIGNFT*GP 102
L +A+ ++ ++ + P+ L D V+ A EA A +I F P
Sbjct: 190 KLGELAQVVELEYLKTDLIPMFLSLTQDEQDSVRLLAVEACVSFASLFQQEDIEMFV-MP 248
Query: 101 EHQNC 87
+NC
Sbjct: 249 TVRNC 253
Score = 45.2 bits (102), Expect = 7e-07
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 4/181 (2%)
Frame = -2
Query: 677 LAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLV 498
L +D VR A + LA + E+ L + +S D ++R A
Sbjct: 175 LCQDDTPMVRRAAATKLGELAQVVELEYLKTDLIPMFLSLTQDEQDSVRLLAVEACVSFA 234
Query: 497 EQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMAD 318
+ + E V+P V N + + ++ R L + G +IT L+P ++
Sbjct: 235 SLFQQEDIEMFVMPTVRNCTGDTSWRVRYMVADKFTDLQKAVGPEITRTDLVPAFQNLLK 294
Query: 317 DNVANVRFNVAKTLQIMAKYLDPA----VIQPQVKPVLEKLNVDPDVDVKYFASEAIAGI 150
D A VR A ++ + LD A +I + P +++L DP+ VK + I G+
Sbjct: 295 DTEAEVRAAAANKVKDFCQNLDKAHQESIIMNNILPCVKELVADPNQHVKSALASVIMGL 354
Query: 149 A 147
+
Sbjct: 355 S 355
Score = 43.6 bits (98), Expect = 2e-06
Identities = 38/226 (16%), Positives = 91/226 (40%)
Frame = -2
Query: 824 IEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRL 645
+ ++LP + D V+ + S + ++ ++G ++ LLP + +D VRL
Sbjct: 325 MNNILPCVKELVADPNQHVKSALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRL 384
Query: 644 AIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENN 465
II ++ + +G + + L + D + +R A + L Q G ++ +
Sbjct: 385 NIISNLDCVNEVIGIQQLSQSLLPAIVELAEDSKWRVRSAIIEYMPLLAGQLGREFFDEK 444
Query: 464 VIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVA 285
+ + + + R + L + G + ++P VL+M+ D R
Sbjct: 445 LNALCMTWLMDHVFAIREAATLNLRKLVDQFGAEWAETTIIPKVLAMSRDQNYLYRMTCL 504
Query: 284 KTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEAIAGIA 147
+ ++A+ + + P + + D +V++ ++ + IA
Sbjct: 505 FCINVLAEACGSDITTRLLLPTVLSMANDKVANVRFNVAKTLQKIA 550
Score = 39.5 bits (88), Expect = 3e-05
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 5/188 (2%)
Frame = -2
Query: 803 FLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMP 624
F +D+ P VR + L + +V+ ++ L L+P + L +D + VRL +E
Sbjct: 172 FRALCQDDTPMVRRAAATKLGELAQVVELEYLKTDLIPMFLSLTQDEQDSVRLLAVEACV 231
Query: 623 LLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLN 444
A QE + + + D + +R L + GP+ +++P N
Sbjct: 232 SFASLFQQEDIEMFVMPTVRNCTGDTSWRVRYMVADKFTDLQKAVGPEITRTDLVPAFQN 291
Query: 443 MSHEQNYLHRMTYL-----FCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKT 279
+ + R FC N L + + I +LP V + D +V+ +A
Sbjct: 292 LLKDTEAEVRAAAANKVKDFCQN-LDKAHQESIIMNNILPCVKELVADPNQHVKSALASV 350
Query: 278 LQIMAKYL 255
+ ++ L
Sbjct: 351 IMGLSPIL 358
Score = 27.9 bits (59), Expect = 0.11
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 17/148 (11%)
Frame = -2
Query: 842 WADRTTIEHLLPLFLTQLKDECPEVRLNIIS-----------------NLECVNEVIGIQ 714
W R+ I +PL QL E + +LN + NL + + G +
Sbjct: 419 WRVRSAIIEYMPLLAGQLGREFFDEKLNALCMTWLMDHVFAIREAATLNLRKLVDQFGAE 478
Query: 713 QLVQSLLPAIVELAEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAI 534
+++P ++ ++ D + R+ + + +LA G + L +S D V +
Sbjct: 479 WAETTIIPKVLAMSRDQNYLYRMTCLFCINVLAEACGSDITTRLLLPTVLSMANDKVANV 538
Query: 533 REAATLNLKKLVEQYGPQWAENNVIPKV 450
R N+ K +++ PQ + + P+V
Sbjct: 539 R----FNVAKTLQKIAPQLDQAVIQPQV 562
Score = 26.6 bits (56), Expect = 0.25
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1
Query: 867 VIMGLSPIVGRQN 829
VIMGLSPI+GR N
Sbjct: 350 VIMGLSPILGRHN 362
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 25.0 bits (52), Expect = 0.77
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 382 PKCAARTSRPGCCCRPC 332
P C RPG CC+ C
Sbjct: 92 PTCDEPVHRPGRCCKTC 108
>AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein.
Length = 150
Score = 25.0 bits (52), Expect = 0.77
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 539 RTRGPPATTCTSWSASRRRTPGPAVPPVEAC 631
R+ P A W A+ P PA P+E C
Sbjct: 25 RSNSPEAGGGGFWLAAASGAPHPAALPIEGC 55
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 25.0 bits (52), Expect = 0.77
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 539 RTRGPPATTCTSWSASRRRTPGPAVPPVEAC 631
R+ P A W A+ P PA P+E C
Sbjct: 25 RSNSPEAGGGGFWLAAASGAPHPAALPIEGC 55
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 599 PGPAVPPVEACAR*WPDGPSTWCPLPAP 682
PGPA+PP +P P PLP P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQV-PPLPLP 186
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 862 HGPEPHSGQTEPLLNISCRCS 800
H PEP+ + P+ SC+ S
Sbjct: 24 HSPEPYPPRCPPIYEPSCQYS 44
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 22.6 bits (46), Expect = 4.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 618 GGTAGPGVLRREADQLVHVVAG 553
GG GPG R H+VAG
Sbjct: 327 GGRRGPGPARSRRHLPAHLVAG 348
>X06905-1|CAA30009.1| 489|Tribolium castaneum protein ( Tribolium
castaneum mRNAfor alhpa amylase 3'region. ).
Length = 489
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 839 ADRTTIEHLLPLFLTQLKDEC 777
ADR +I HL + + DEC
Sbjct: 24 ADRNSIVHLFEWKWSDIADEC 44
>U04271-1|AAA03708.1| 490|Tribolium castaneum alpha-amylase I
protein.
Length = 490
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 839 ADRTTIEHLLPLFLTQLKDEC 777
ADR +I HL + + DEC
Sbjct: 25 ADRNSIVHLFEWKWSDIADEC 45
>DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein.
Length = 162
Score = 21.4 bits (43), Expect = 9.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 661 SGGSVWPSSSTCLYWRDSWARSSS 590
SG +W +C+ ++S R +S
Sbjct: 76 SGSKIWQMERSCMCCQESGEREAS 99
>AY675073-1|AAV74190.1| 533|Tribolium castaneum chitinase 5
protein.
Length = 533
Score = 21.4 bits (43), Expect = 9.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 235 GWMTAGSKYLAII 273
GW GSKY A++
Sbjct: 103 GWAEGGSKYSAMV 115
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,738
Number of Sequences: 336
Number of extensions: 4342
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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