Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c07
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 254 1e-68
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 41 2e-04
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 36 0.006
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 35 0.017
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 34 0.030
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 33 0.070
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.86
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 28 2.0
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 4.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.6
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.0
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 6.0
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 26 6.0
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 8.0
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 8.0
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 8.0
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 26 8.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 8.0
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 254 bits (622), Expect = 1e-68
Identities = 125/235 (53%), Positives = 167/235 (71%), Gaps = 4/235 (1%)
Frame = -2
Query: 851 AP*WADRTTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELA 672
AP T E+LLP+FL LKDE PEVRLNIIS LE VN+V+GI+ L QSLLPAIV LA
Sbjct: 351 APQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLA 410
Query: 671 EDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQ 492
ED +WRVRLAII+++PLLA QLG EFF+EK+ +LCMSWL DHVY+IREAA NL+KL E
Sbjct: 411 EDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHVYSIREAAIKNLRKLTEI 470
Query: 491 YGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDN 312
+G +WA +IPK L M NYL+RMT +F I+ ++ ++ + +LPT+ + +D
Sbjct: 471 FGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALNAEVIEKQILPTLEQLVNDP 530
Query: 311 VANVRFNVAKTLQIMAKYL----DPAVIQPQVKPVLEKLNVDPDVDVKYFASEAI 159
+ N+RFNVAK +++ L D V + Q+ P+LE+L D D DV+YFA++A+
Sbjct: 531 IPNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLLEQLTKDNDPDVQYFATQAL 585
Score = 73.7 bits (173), Expect = 3e-14
Identities = 50/224 (22%), Positives = 101/224 (45%)
Frame = -2
Query: 833 RTTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWR 654
R +E ++P+ + D VR + N+ + +G ++ + LLP +EL +D
Sbjct: 318 RIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPE 377
Query: 653 VRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWA 474
VRL II + ++ +G E + L ++ D + +R A + L +Q G ++
Sbjct: 378 VRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFF 437
Query: 473 ENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRF 294
+ ++ + Y R + + L+E+ G + T ++P L+M R
Sbjct: 438 NEKMGNLCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRM 497
Query: 293 NVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEA 162
+ +A L+ VI+ Q+ P LE+L DP ++++ ++A
Sbjct: 498 TTIFAISEIAPALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKA 541
Score = 67.7 bits (158), Expect = 2e-12
Identities = 43/195 (22%), Positives = 91/195 (46%)
Frame = -2
Query: 839 ADRTTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTK 660
+D +LL + + D R + +N + +V+G + L+ V L +DT+
Sbjct: 238 SDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTE 297
Query: 659 WRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQ 480
VR AI +P L + E++ + + D +R A +N+ L Q G +
Sbjct: 298 QEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKE 357
Query: 479 WAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANV 300
++P L + ++N R+ + + V+++V G ++ ++ LLP ++++A+D V
Sbjct: 358 KTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRV 417
Query: 299 RFNVAKTLQIMAKYL 255
R + + ++A+ L
Sbjct: 418 RLAIIDYIPLLAQQL 432
Score = 61.7 bits (143), Expect = 1e-10
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 1/210 (0%)
Frame = -2
Query: 824 IEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQS-LLPAIVELAEDTKWRVR 648
I+ +PLF + D+ VRL + + EV+ ++ LL + D+ WR R
Sbjct: 203 IDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTR 262
Query: 647 LAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAEN 468
+ + LA +G ++L + + D +R A + E +
Sbjct: 263 YMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLE 322
Query: 467 NVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNV 288
+IP + + ++ R I L+ GK+ TT LLP L + D VR N+
Sbjct: 323 EIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNI 382
Query: 287 AKTLQIMAKYLDPAVIQPQVKPVLEKLNVD 198
L+++ K + ++ + P + L D
Sbjct: 383 ISKLEVVNKVVGIELLSQSLLPAIVTLAED 412
Score = 59.3 bits (137), Expect = 7e-10
Identities = 41/183 (22%), Positives = 89/183 (48%)
Frame = -2
Query: 821 EHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLA 642
+ L+ F+ +KD EVR I + + E++ + +++ ++P I EL D VR A
Sbjct: 283 DELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAA 342
Query: 641 IIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNV 462
+ ++ LA QLG+E E L + + L D +R L+ + + G + ++
Sbjct: 343 LGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSL 402
Query: 461 IPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAK 282
+P ++ ++ ++ + R+ + I +L++ G + + +S +D+V ++R K
Sbjct: 403 LPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHVYSIREAAIK 462
Query: 281 TLQ 273
L+
Sbjct: 463 NLR 465
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Frame = -2
Query: 812 LPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIE 633
+ + + +LK + RLN + L + +G ++ L+P + E +D V A+ +
Sbjct: 13 IAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDED-EVLSALAD 71
Query: 632 HMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPK 453
+ +G + L S + +R+ A +L K+ + E +P
Sbjct: 72 QLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFVPL 131
Query: 452 VLNMSHEQNYLHRMTY--LFC 396
V +S + + R + L+C
Sbjct: 132 VQRLSTAEWFTSRASSAGLYC 152
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 41.1 bits (92), Expect = 2e-04
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 6/185 (3%)
Frame = -2
Query: 791 LKDECPEVRLNIISNLECVNEVIGIQQL---VQSLLPAIVELAEDTKWRVRLAIIEHMPL 621
L +E PEV +I+ ++ + V+G+ + ++ LLP + + + +V+ I+ +
Sbjct: 866 LGEEYPEVLGSILGAIKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGK 925
Query: 620 LAGQLGQEFFDEKLTSLC---MSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKV 450
+A + + + +C + L H +IR AA + + GPQ +V+ +
Sbjct: 926 IADRGSEYVSAREWMRICFELIDMLKAHKKSIRRAAVNTFGYISKAIGPQ----DVLATL 981
Query: 449 LNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKTLQI 270
LN Q +R+ I +++E C ++P +++ NV+ V K+L
Sbjct: 982 LNNLKVQERQNRVCTTVAIAIVAETC----MPFTVVPALMADYRTPEMNVQNGVLKSLAF 1037
Query: 269 MAKYL 255
M +Y+
Sbjct: 1038 MFEYI 1042
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 36.3 bits (80), Expect = 0.006
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = -2
Query: 797 TQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVRLAIIEHMPLL 618
T L D VR ++++ L + G + +L ++ DT W +R A E + L
Sbjct: 599 TLLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLRCAFFESITGL 658
Query: 617 AGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVE 495
+ +G DE + L + LVD A+ E+ + L+E
Sbjct: 659 SIFIGPRSVDEYILPLMLQALVDPEPAVLESVLGSFSGLIE 699
Score = 35.5 bits (78), Expect = 0.010
Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 6/221 (2%)
Frame = -2
Query: 836 DRTTIEHLLPLFLTQLKDECPEVRLN-IISNLECVNEVIGIQQL-----VQSLLPAIVEL 675
D + ++ +LP +T L+D+ +VR++ +I+ V+ V I + + L P +
Sbjct: 465 DESKLDTVLPFVMTLLRDQYADVRISALITITRLVSNVTSIAPINAFLFQEYLFPDLQHF 524
Query: 674 AEDTKWRVRLAIIEHMPLLAGQLGQEFFDEKLTSLCMSWLVDHVYAIREAATLNLKKLVE 495
D R R +P+LA Q + F SL + ++ + E +L+
Sbjct: 525 LFDMNSRTRATYASCLPILAKQASK--FLNLAQSLRNAGILSFPESEYENINHGKAELLF 582
Query: 494 QYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADD 315
+ G V V + + + + R + L + L GK + ++L +++ +D
Sbjct: 583 ETGRHDLVVTVERHVSTLLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLND 642
Query: 314 NVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPD 192
+R +++ ++ ++ P + + P++ + VDP+
Sbjct: 643 TDWMLRCAFFESITGLSIFIGPRSVDEYILPLMLQALVDPE 683
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 34.7 bits (76), Expect = 0.017
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = -2
Query: 464 VIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRV--LLPTVLSMADDNVANVRFN 291
+IP+ + ++ +N R LFC+N + + + + L T ++A D NVR N
Sbjct: 179 MIPRFIELARHENPKIRTDALFCLNQFVLIQSQSLYAHIDTFLETCYALATDVSPNVRKN 238
Query: 290 VAKTLQIMAKYLDPAVIQPQVKPVLEKL---NVDPDVDVKYFASEAIAGIA 147
V + L + + P I P + ++E + D D +V A E IA
Sbjct: 239 VCQALVYLLD-VRPDKIAPSLGSIVEYMLYSTQDSDQNVALEACEFWLAIA 288
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 33.9 bits (74), Expect = 0.030
Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 9/231 (3%)
Frame = -2
Query: 815 LLPLFLTQLKDECPEVRLNIISNLECVNEVIGIQQL--VQSLLPAIVELAEDTKWRVRLA 642
LLPL LT D EVR + ++ V +++ V+ LLP +++ + WR + A
Sbjct: 1444 LLPLLLTSFGDNANEVRE---ATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKA 1500
Query: 641 IIEHMPLLAGQLGQEF--FDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAEN 468
+E + L++ ++ F + L D +R A +L + + +
Sbjct: 1501 SVEILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQ- 1559
Query: 467 NVIPKVLN-MSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMA-DDNVANVRF 294
++P +L +S Y L + S V D + L+ +L + A +
Sbjct: 1560 TLVPTLLKALSDCTRYTD--DALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKR 1617
Query: 293 NVAKTLQIMAKYLDP---AVIQPQVKPVLEKLNVDPDVDVKYFASEAIAGI 150
AK +MA +P AV + P L ++ +DP D + A++A+ +
Sbjct: 1618 QSAKIFGLMASLTEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSL 1668
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 32.7 bits (71), Expect = 0.070
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Frame = -2
Query: 770 VRLNIISNLECVNEVIGIQQLVQSLLPAIVELAEDTKWRVR-LAIIEHMPLLAGQLGQEF 594
V LNIIS++ N + ++ + SLLPA+ +L+ + + LA + L+ +
Sbjct: 467 VLLNIISSVIGRNAELDLENPISSLLPALEQLSNYSNREISDLAKDVYKTLIQSK----- 521
Query: 593 FDEKLTSLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQN-YLH 417
D+ SL +S+ + +R L+KL+E+ + V+ ++N+ ++N Y+H
Sbjct: 522 -DD--YSLALSYTQSDLVPVRGQGVYMLRKLIEKKDDRINPVRVLHVLINLLRDENSYVH 578
Query: 416 RMTYLFCINVLSEVCGK 366
L I+ + +C K
Sbjct: 579 ----LNVISAVVSLCDK 591
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.86
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Frame = +1
Query: 253 SKYLAIICSVL-ATLNRTLATLSSAIDNTVGSSTLVVMSLPHTSDSTLMQNKYVILCK*F 429
S Y A + ++ ++L+ T + SSAI +V SSTL+ S +T S++ + ++
Sbjct: 707 STYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTV 766
Query: 430 --CSCDMFSTLGMTLFSAHCGPYCSTSFFRLRVAASRMAYT-----WSTSHDMHKLVSFS 588
S ++ S + +TS + L ++SR T ++TS + S +
Sbjct: 767 SNISSNLPSATASSQSQLTNSSTLATSLY-LSSSSSRTISTSSTNEYNTSFHAPTVSSTT 825
Query: 589 SKNSWPSCPASRGMCS-MMARRTLHLVSSASST 684
S +S S A++G+ S + L SS +ST
Sbjct: 826 SSSSTTSLAANKGVNSNSITSLNLESTSSVTST 858
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 488 GPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGK 366
GPQ ++NV+P+V+ S E Y + + LSE GK
Sbjct: 456 GPQVHQSNVLPRVIQQSSE--YANTQLQYISLTELSERFGK 494
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 598 SWPSCPASRGMCSMMARRTLHLVSSASSTMAGRRDCTSCWMPITSFTHSRLEIMLS 765
+WPS P SR + +A T+ L S R S +P +TH++LEI+++
Sbjct: 472 NWPSLPHSRLIVVAVAN-TMDLPERILSNRISSRLGLSR-VPFEPYTHTQLEIIIA 525
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = -2
Query: 467 NVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNV 288
N++ V+N HR T L C+N + I +R L LS N ANVRF V
Sbjct: 358 NMLKLVVNSEENAVQRHRSTILACLNDVD----SSIQSRAL---ELSTFLVNEANVRFMV 410
Query: 287 AKTLQIMAKYLD 252
+ L + D
Sbjct: 411 RELLSFLDNVSD 422
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 557 LVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVL 447
L+ VY IRE L K+ ++YG + EN+V P+VL
Sbjct: 120 LLPAVYEIREKDVLYKKEDADKYGFIFNENSV-PRVL 155
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 466 LFSAHCGPYCSTSFFRLR-VAASRMAYTW 549
LFS C YC FF+LR SR + W
Sbjct: 203 LFSMVCAIYCYVRFFKLRHTPFSRPWWAW 231
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 360 DVLAAH-FGQHVNAEQVRHPVQVVLLVRHVQYFGYDVVLC 476
DVL H + HV+AE+V + V+ V+Y G + C
Sbjct: 151 DVLQIHRYDPHVSAEEVMRALNDVVESGKVRYIGASTMRC 190
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 118 ILHKGPNIRTVLWSIIDSW 62
I+HK P + +WSII SW
Sbjct: 273 IVHKAPWLFQGVWSIIKSW 291
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 803 FLTQLKDECPEVRLNIISNLECVNEVIGIQQLVQSLLPAIVELAED 666
F+ LKD P +++ NLE +E +Q+LV P+ + +A D
Sbjct: 984 FMVHLKDNSPVTLQDLVKNLE-ASEQQSLQRLVTE-KPSTLAVASD 1027
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 316 SSAIDNTVGSSTLVVMSLPHTSDSTLMQNKY 408
SS+ DN S+TL + + H S+ Q++Y
Sbjct: 33 SSSFDNEAASTTLGISTAIHASNRPFRQDEY 63
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 8.0
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 7/113 (6%)
Frame = -2
Query: 746 LECVNEVIGIQQLVQSLLPAIVELAEDT---KWRVRLAIIEHMPLLAGQLGQEFFDEKLT 576
+E NE+ G S+ V+ E+T K+ V +++I + L G ++ +
Sbjct: 54 IELANEIFGFNGWSSSIQDIHVDYVEETKEKKFNVGISVIVRVTLKDGSFHEDVGYGSIE 113
Query: 575 SLCMSWLVDHVYAIREAATLNLKKLVEQYGPQWA----ENNVIPKVLNMSHEQ 429
+ C + + +E T LK+ + +G + I K+L M+ Q
Sbjct: 114 N-CRVKALAYEKCKKEGTTDALKRALRNFGSSMGNCLYDKRYIQKILKMAPAQ 165
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 385 CPKCAARTSRPGCCCRPCCLWPTTMLPTCGSML 287
CP C R CC CL T CG+ L
Sbjct: 368 CPTCDRVVERIDGCCHMNCLCGTHFCFLCGAYL 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,081
Number of Sequences: 5004
Number of extensions: 67627
Number of successful extensions: 252
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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