Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c06
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    24   1.2  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   6.6  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +2

Query: 566 QLCNT**NNKLWNHCITL--------YLTKNKLLKSFSCLIIHDLRGVAATQNHIE 709
           Q+C     N +W+HC  +         LT N+++   S  +    + V   +NHIE
Sbjct: 138 QVCTPNATNTVWSHCQCVLADGVERGILTANRMIPGPSIQVCEGDKVVIDVENHIE 193


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +2

Query: 566 QLCNT**NNKLWNHCITL--------YLTKNKLLKSFSCLIIHDLRGVAATQNHIE 709
           Q+C     N +W+HC  +         LT N+++   S  +    + V   +NHIE
Sbjct: 138 QVCTPNATNTVWSHCQCVLADGVERGILTANRMIPGPSIQVCEGDKVVIDVENHIE 193


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 408 LHNSRSPNYVMSHKKN*SFFILN 476
           L +S  PNY++   KN ++ +LN
Sbjct: 11  LDSSTQPNYLILSNKNNTYLVLN 33


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 626 LNKVLYNDSIIYCFIKC 576
           ++K+L ND ++  +IKC
Sbjct: 32  VDKILNNDRVLTNYIKC 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,476
Number of Sequences: 336
Number of extensions: 3856
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)