Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c03
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    26   0.45 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   1.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.2  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   5.6  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   5.6  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   5.6  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    22   5.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.6  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   7.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   7.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   7.4  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   7.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   9.7  

>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVEGSVKTGS 796
           P  E+L + L DAL    SKC E   K GS
Sbjct: 58  PDGEELKKALPDALHSGCSKCTE-KQKEGS 86


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVEGSVKTGS 796
           P   +L R L DAL    SKC E + K GS
Sbjct: 58  PDGAELKRHLPDALHTECSKCSE-TQKNGS 86



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 763 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 662
           AELK+        ECS C ET    S      LI
Sbjct: 61  AELKRHLPDALHTECSKCSETQKNGSKKIMRHLI 94


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVE 817
           P  E+L R L DAL  + +KC +
Sbjct: 57  PDGEELKRVLPDALKTSCAKCTD 79


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 507 SFTRKLKKEF--RPCSNIKTLSKCYKNGA*LVSKTATT 400
           +FT +  K F  R  +NI ++S+C  NG  +++K   T
Sbjct: 19  AFTCEGCKSFFGRTYNNISSISECKNNGECVINKKNRT 56


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVE 817
           P  ++L R L DAL    +KC E
Sbjct: 53  PDADELKRVLPDALKSDCAKCSE 75


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVE 817
           P  E+L + + DAL    +KC E
Sbjct: 54  PEGEELKKDIPDALQNECAKCNE 76


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKC 823
           P+ E+L + + DAL    +KC
Sbjct: 53  PSGEELKKDIPDALKNECAKC 73


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKCVEGSVKTGS 796
           P  ++L   L DAL  + SKC +   K GS
Sbjct: 56  PDGQELKNNLADALQTSCSKCSQRQ-KDGS 84


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 364 LFLPDSPYLCHNCCRCFRH*SRS 432
           ++  D  Y+CH CC      S++
Sbjct: 641 MYAADVFYICHVCCSTIHEVSKA 663


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 760 ELKKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDH 644
           ELKK      + +CS C E   + S+    +LI    D+
Sbjct: 64  ELKKNMPDAIETDCSKCSEKQKEGSDFIMRYLIDNKPDY 102


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 542 PHFYLGIAQWT 574
           PHF L +A WT
Sbjct: 132 PHFLLPVAAWT 142


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 542 PHFYLGIAQWT 574
           PHF L +A WT
Sbjct: 132 PHFLLPVAAWT 142


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 885 PTXEDLHRQLEDALGEALSKC 823
           P  ++L   L DAL  + SKC
Sbjct: 56  PDGQELKNNLADALQTSCSKC 76


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 347 FSFQSNYFCLILHIYVTIVVAVFDT 421
           FSF S + CL  + Y   +  ++ T
Sbjct: 73  FSFMSRFLCLPFYSYFFYLSYIYTT 97


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 347 FSFQSNYFCLILHIYVTIVVAVFDT 421
           FSF S + CL  + Y   +  ++ T
Sbjct: 29  FSFMSRFLCLPFYSYFFYLSYIYTT 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,898
Number of Sequences: 336
Number of extensions: 3963
Number of successful extensions: 27
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)