Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c03
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 38 0.003
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 32 0.12
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.17
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.50
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 29 0.67
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 29 0.67
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 29 0.67
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.88
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 29 0.88
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 0.88
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 1.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.2
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 28 1.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 28 2.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 2.0
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 2.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.7
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 27 2.7
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 3.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.6
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 27 4.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.7
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.2
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 6.2
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 8.2
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 37.5 bits (83), Expect = 0.003
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -1
Query: 463 YKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEE 284
Y I+ +L+ IS E C +N ++ LEA+L+ + H D T + + +EE
Sbjct: 635 YNMILNLLRVEG-ISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEE 693
Query: 283 NTRLNEQVQELQRQVRTL 230
L Q++ + VRT+
Sbjct: 694 YHTLKTQLERYRTDVRTV 711
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = -1
Query: 754 KKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVC 575
K+ V++ + C +C++ + C CDH FC C + ++ S++
Sbjct: 120 KQREVVHHEGTCEICYD-------EGCLPFFSAECDHEFCLACYRQYLDSRISEGESVIQ 172
Query: 574 CP 569
CP
Sbjct: 173 CP 174
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 721 CSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVK 548
C +C + ++ T P+ T C H +C+ C++ N V CP+C +++
Sbjct: 192 CMMCVQRGDERVAITTPYT--TDCGHTYCYACIMSRLKLVNN-----VSCPICKHRIR 242
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.9 bits (64), Expect = 0.50
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -1
Query: 652 CDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQVKMWRSLKPNAVVTCKFYKKTQERVPA 473
C H FC C+I LQ ++ CPLC + ++ ++ N + KT
Sbjct: 375 CSHVFCLHCLIILQKQKVDF------CPLCRAK-EVMKADSRNIDHALMNFMKTYFPREI 427
Query: 472 VQQYKNIIKVLQERSVISVENSDNNCDI 389
++++ S ISV + NNC I
Sbjct: 428 KEKFEENENDTFTPSSISVVSGQNNCVI 455
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -1
Query: 310 SENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRAPAELNER 155
S+ +QL++E +LN Q +V +LA ++ + +N ++ R R + LNE+
Sbjct: 222 SQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEV-RKLRPTSALNEK 272
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/85 (20%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = -1
Query: 496 KTQERVPAVQQYKNIIKV------LQERSVISVENSDNNCDINMENQAKIVALEAELKNE 335
K +E++ A+ Y+++ Q++ + +N + ++ + ++ ++VALE+ E
Sbjct: 23 KEKEKINAINTYEDVANSEDEFYNAQDKILFDADNGEQADELELSDE-ELVALESSSDEE 81
Query: 334 KNHSDQVTSENRQLI-EENTRLNEQ 263
++++ SEN +L ++ +NE+
Sbjct: 82 DGNAEENLSENEELSGKKKDAVNEE 106
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -1
Query: 400 NCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTL 230
NC + + NQ + + + NH D V ++ + +++EN RL EQ+ L+ +++ L
Sbjct: 583 NCGLLLPNQVSMPNISNIVST--NHLD-VETQMKLIMDENQRLREQIAVLRSRIQHL 636
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 730 KFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVID 617
KF+C+VCF+ + N T F + T C H C C+ D
Sbjct: 171 KFQCNVCFDEF----NGTDCFQL-TRCGHVSCQSCLRD 203
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.1 bits (62), Expect = 0.88
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Frame = -1
Query: 475 AVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQ--VTSEN 302
A + + + IK L + + + D ++ + +L + K+ ++ + S
Sbjct: 303 AEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNKHDLEKKRLQSAI 362
Query: 301 RQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDR-APAELNERFRSLVYSTIS 125
+ L EEN L +Q+++LQR+ LA + + N + D + A + E + STI
Sbjct: 363 QPLQEENNSLKQQIEQLQRE---LASETVVKENLKSSLDQQSANVQKLESTNRALESTIK 419
Query: 124 ELFIENRVHSIQNYV 80
L E V++++N +
Sbjct: 420 TL--EEDVYTMKNKI 432
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.88
Identities = 25/109 (22%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Frame = -1
Query: 391 INMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGI 212
+ ++ +V +A + E+ + V + + E+ T +E V+ R+V+ L +
Sbjct: 487 VRLDLHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKT--DEPVK--MRKVKKLVKVADL 542
Query: 211 TVNPQIGRDDRAPAELNERFRSLVYSTIS--ELFIE--NRVHSIQNYVY 77
+V+ Q +DR P E+ E++R + I+ +L E +R ++++ Y+Y
Sbjct: 543 SVSVQ---EDRLPTEVLEKYREAEHQMIATDKLVAETVDRKNALEEYIY 588
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 28.7 bits (61), Expect = 1.2
Identities = 33/146 (22%), Positives = 62/146 (42%)
Frame = -1
Query: 559 TQVKMWRSLKPNAVVTCKFYKKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINME 380
T +WR N C F + T R + ++K I + S ++ E+ ++
Sbjct: 586 TSSTIWRHKLENGYRLCDF-RGTLLREEMIGEFKQFIWRPRPPSPLTKEDM-KKIRKKLK 643
Query: 379 NQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNP 200
+ ++ E ++ + + + ++ + RQLI E + ++V + +A +R IT P
Sbjct: 644 DYNRLFD-EEDIAEQSSANRELAARRRQLISEWQKYRDEV------IARVAEERAITGQP 696
Query: 199 QIGRDDRAPAELNERFRSLVYSTISE 122
I PAE E + V ISE
Sbjct: 697 AI----TVPAEEEEIIQETVEEVISE 718
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 364 VALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQ 242
+AL+ ELKN D ++S N+Q T+L E+++ L+R+
Sbjct: 935 LALQDELKNRNLLMDDISSYNKQ----TTKLQEKIKWLERE 971
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 298 VGFQ--KLLDHCDFFRSLIQLPKQLFLPDSPYLCH 396
+GFQ K+ D+F L +L ++L D Y+CH
Sbjct: 324 LGFQPYKITYSSDYFDKLYELAEELIKRDKAYVCH 358
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/80 (20%), Positives = 39/80 (48%)
Frame = -1
Query: 361 ALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQIGRDD 182
++ AE+K K S+ + ++ + ++ ++ Q+ + +LAP + N Q
Sbjct: 794 SMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ----Q 849
Query: 181 RAPAELNERFRSLVYSTISE 122
++P E ++ R Y+++ E
Sbjct: 850 KSPVEKPKKLRKDRYASVEE 869
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 349 ELKNEKNHSDQV--TSENRQLIEENTRLNEQVQELQRQVRTL 230
EL N K+++ V RQL+EEN L+ +V +L +++ L
Sbjct: 390 ELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDL 431
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 346 LKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNPQ 197
L++ + Q + +Q ++ + +Q Q+ Q+Q + APQ NPQ
Sbjct: 253 LQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 724 ECSVC-FETYSQQSNDTCPFLIPTTCDHGFCFKCV 623
+CSVC FE + + I + C HGFC++C+
Sbjct: 626 KCSVCNFERWKDR--------IISLCGHGFCYQCI 652
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -1
Query: 772 RMMAELKKEPVINFKFECSVCFETYSQQSN----DTCPFLIPTTCDHGFCFKCVIDLQSN 605
RM+ ELK N +ECSVC +T + ++ TC + +C +C + +
Sbjct: 185 RMIVELK-----NRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNED 239
Query: 604 AMNIPH 587
A P+
Sbjct: 240 AWRCPY 245
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 757 LKKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVI 620
+K E + F C +C + Y I TTC H FC +C I
Sbjct: 242 VKNEKKEDIPFVCLICKKDYRSP--------IATTCGHHFCEQCAI 279
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 733 FKFECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIPHSIVCCPLCNTQ 554
F EC +C E++++ ++ C H F C+ ++ H+ CP CNT+
Sbjct: 317 FGVECVICLESFTKGDK-----VVALPCKHEFHRPCIAKW---IVDYRHA---CPTCNTE 365
Query: 553 V 551
V
Sbjct: 366 V 366
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 317 LITVIFFVL*FSFQSNYFCLILHIYVTIVVAVFDTNHAP 433
L+ +FF++ F S F LILH+ V V VF H P
Sbjct: 16 LVLRLFFLVVFGLYS--FTLILHLLVINRVDVFSLLHTP 52
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 885 PTXEDLHRQLEDALGEALSKCVEGSVKTG 799
P+ ED+H E LGE + + G + TG
Sbjct: 82 PSDEDIHTANERRLGEIIGTGIAGKLHTG 110
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -1
Query: 391 INMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQR-- 218
++ Q+ + +L+ ++ NEK + S+ +L E + L Q+ TLA ++
Sbjct: 505 VSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEA 564
Query: 217 GITVNPQIGRDDRAPAELNERFRSLVYSTISEL 119
+ N ++ + L F+ + ++ +L
Sbjct: 565 AVATNNELSESKNSLQTLCNAFQEKLAKSVMQL 597
Score = 26.2 bits (55), Expect = 6.2
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = -1
Query: 460 KNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEEN 281
K + L+E + +IN E + ++ K E++ + S + +L E++
Sbjct: 423 KQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKS 482
Query: 280 TRLNEQVQELQRQVRTLAPQRGITVNPQIGRDDRAPAELNERFRSLVY-STISEL 119
++++ QEL + Q+ ++ + Q LNE+ + VY S ++EL
Sbjct: 483 ALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNEL 537
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 724 ECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVIDLQSNAMNIP 590
EC +C E + PF T C H +C++C+++ + + P
Sbjct: 84 ECPICTEALQR------PFT--THCGHTYCYECLLNWLKESKSCP 120
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 355 EAELKNEKNHSDQVTSENRQLIEENTRLNEQVQELQRQVRTLAPQRGITVNP 200
E E + E+N +D T EN++ +N + E + EL+ ++ NP
Sbjct: 316 EEEEEEEENEADDETRENKR---QNRLVREFISELESSIQKRRKDADEATNP 364
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -1
Query: 430 SVISVENSDNNCDINMENQAKIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQEL 251
S I+ EN+D++ + + ++ A AEL+++ ++ + N +L+EE E +
Sbjct: 158 SHINKENADDSLIQQLYERIELQA--AELRSKDEQVKELNARNAKLLEELDSSEEACKSC 215
Query: 250 QRQVRT 233
Q +T
Sbjct: 216 YTQAKT 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,354
Number of Sequences: 5004
Number of extensions: 66511
Number of successful extensions: 258
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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