Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c02
         (850 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q229X8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_Q6QR20 Cluster: NUP-1; n=4; Trypanosoma cruzi|Rep: NUP-...    33   9.1  

>UniRef50_Q229X8 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2239

 Score = 33.5 bits (73), Expect = 6.9
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = -3

Query: 674  CNFCNYSRVILEKKITGKSKLDM*TMNEIEFLFIC*GHK-VFIV--Q*V**LKC*LSCGR 504
            CN+C Y+  IL  K   KS++D+  +N+  F+ IC   K  ++V    +  ++C L+C +
Sbjct: 1619 CNYCQYA-AILNGKAVFKSQIDINKINQFSFVKICLECKPKYLVSYDLLSCVQCGLNCDQ 1677

Query: 503  CSVFVITI 480
            C    +T+
Sbjct: 1678 CQYDQLTV 1685


>UniRef50_Q6QR20 Cluster: NUP-1; n=4; Trypanosoma cruzi|Rep: NUP-1 -
           Trypanosoma cruzi
          Length = 3177

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 296 LRDHYSMSLKKVKMD*YQLTRPLRWLENEHHLCMPLKIYHKRPA 427
           LRDHY     +VK +  Q  R L  LE +H  C  +   H+R A
Sbjct: 153 LRDHYKEEAARVKNELMQKQRALDCLERDHRQCGEVICRHEREA 196


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,876,735
Number of Sequences: 1657284
Number of extensions: 14298955
Number of successful extensions: 25415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25395
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)