Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c02
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    26   0.43 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.7  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   3.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   5.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.3  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.3  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 583 NSISFIVYMSSLLFP-VIFFSKITRL*LQKLQKHIN 687
           N++ FIVY+S LL P   +F K  R  + K  K+ N
Sbjct: 288 NTLFFIVYVSLLLGPHPTYFGKTGRKTVLKTNKYCN 323


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 103 QRDTVHFSKNQMQLTQVYRGKFFFLYIFV 189
           +R T+ FS    +  Q   GKF   YIF+
Sbjct: 344 ERQTLMFSATFPEEVQQLAGKFLLNYIFI 372


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 165 IFLSLYFCLF 194
           IF SLYFC+F
Sbjct: 253 IFCSLYFCIF 262


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 165 IFLSLYFCLF 194
           IF SLYFC+F
Sbjct: 78  IFCSLYFCIF 87


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 220 NFNIIKYV-YKKRLLCVLSHEYL 285
           N  +I Y  +KKRLLC L   Y+
Sbjct: 120 NSTVIDYKRHKKRLLCYLLARYV 142



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 263  VFYLMNICYTVLRD 304
            VFY+ ++CY  +++
Sbjct: 1009 VFYICHVCYATIQE 1022


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 220 NFNIIKYV-YKKRLLCVLSHEYL 285
           N  +I Y  +KKRLLC L   Y+
Sbjct: 138 NSTVIDYKRHKKRLLCYLLARYV 160


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 350 LTRPLRWLENEHHLCMPLKIYHKRPAHREQQ*ALVSTTEYMRPLS*SQIR 499
           LTR  R +E  H LC+  K    +P H  ++ A     EY R LS   +R
Sbjct: 245 LTRRRR-IEIAHALCLTNKNLVSKPPHEVEKRAQDGQYEY-RSLSHVSLR 292


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +2

Query: 263 VFYLMNICYTVLRD 304
           VFY+ ++CY  +++
Sbjct: 290 VFYICHVCYATIQE 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,180
Number of Sequences: 336
Number of extensions: 4548
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)