Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    31   0.27 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    29   0.83 

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 220 SSLETDMSQKRQKYKERKIYPGKPELVASD 131
           ++  TD+ +K QK KER+  PG P ++  D
Sbjct: 121 ATTSTDLKRKSQKIKERREDPGDPSILEGD 150


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 182 FLSFLRHISF*TRILTSLNMYIKKDSYVFYLMNICYT-VLRDHYSMSLKKVK 334
           FLS +RH ++ T +  ++  Y   ++ VF   NIC T V+      S KK K
Sbjct: 160 FLSSMRHFTYHTNVNLTVQGYTSAEAPVFVDENICVTPVVVSLVKNSFKKRK 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,986
Number of Sequences: 5004
Number of extensions: 69135
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)