Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c01
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    24   4.1  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    23   5.5  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    23   5.5  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    23   7.2  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    23   9.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   9.6  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 262 PKAPKSEFIQVLSFLI*RTLVHGRRTVNRLKYLSSSNIKHF 140
           P +PK+ FIQ   FL+    V     +  LK +  S+I  F
Sbjct: 651 PASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSF 691


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 YSPSTVHKRPSNKKRQNLDKF 244
           +SPS+   +PSN +  N+ KF
Sbjct: 261 FSPSSNAAKPSNSEECNIPKF 281


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 69  G*SVKGGRCVRGPNKRYXGALIT 1
           G +  GG  +RG  K+Y G LI+
Sbjct: 447 GLNAVGGGLLRGTGKQYIGGLIS 469


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 237 SKFCRFLFDGRLCTVDGL 184
           S FCR L  GR+ TV+ L
Sbjct: 203 SPFCRGLLTGRIKTVEDL 220


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 YFNRFTVRLPCTSVRQIRN 224
           +F   T RLPC+ + +I+N
Sbjct: 145 FFPDVTKRLPCSCLSEIKN 163


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 153 FEDDKYFNRFTVRLPCTSV 209
           FED +Y  RFT+R   T+V
Sbjct: 634 FEDYQYMGRFTLRDQGTTV 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,702
Number of Sequences: 5004
Number of extensions: 10850
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)