Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c01
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    26   4.8  
08_01_0674 + 5835592-5835649,5835750-5835856,5835953-5836019,583...    25   6.3  
04_04_0651 - 26952360-26952437,26952923-26952999,26954072-269543...    25   6.3  
04_04_1420 + 33441260-33443704                                         25   8.3  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    25   8.3  

>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 176 SIYSPSTVHKRPSNKKRQ 229
           S+ SP T++K+P+N+ R+
Sbjct: 423 SVISPETLYKKPANRTRE 440


>08_01_0674 +
           5835592-5835649,5835750-5835856,5835953-5836019,
           5836244-5836481,5836570-5836720,5836829-5837173
          Length = 321

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 243 NLSKFCRFLFDGRLCTVDGL*ID*NICHLQTLNTFNRNV 127
           ++ + CRFL  G LCT D + +  N+ ++  + T  ++V
Sbjct: 230 DVEEACRFLKVGLLCTQDAMKLRPNMINIVQMLTGEKDV 268


>04_04_0651 -
           26952360-26952437,26952923-26952999,26954072-26954300,
           26954926-26955537
          Length = 331

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 165 KYFNRFTVRLPCTSVRQIRND 227
           K F+  ++R P   +RQ+RND
Sbjct: 242 KLFDMASIRTPLVKLRQVRND 262


>04_04_1420 + 33441260-33443704
          Length = 814

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 261 QKLQNQNLSKFCRFL-FDGRLCTVD 190
           + ++NQ +++   FL FDG  CTVD
Sbjct: 414 RSVKNQMINQSSSFLHFDGHACTVD 438


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 159  DDKYFNRFTVRLPCTSVRQIRNDRTWINSDFGAFGS 266
            + K+   FTV     +   I ND    NS++G FGS
Sbjct: 997  ETKFVRFFTVGYSAPAQAGIVNDFGLSNSEYGVFGS 1032


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,659,623
Number of Sequences: 37544
Number of extensions: 57725
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)