Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c01
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical p...    25   7.4  
U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical p...    25   7.4  
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    25   9.7  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    25   9.7  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 EDDKYFNRFTVRLPCTSVRQIRNDRTWIN 242
           +D K      +RLPCT V ++RN    IN
Sbjct: 378 QDSKEVLILDLRLPCTPVARLRNHEATIN 406


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 198 CTSVRQIRNDRTWIN 242
           CT+VR+I  D+ WIN
Sbjct: 383 CTAVREINFDQRWIN 397


>Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 VRLPCTSVRQIRNDRTWINSDF 251
           +++    +  +RNDR W+NS++
Sbjct: 428 IKVEAGELTTLRNDRAWMNSNY 449


>Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 186 VRLPCTSVRQIRNDRTWINSDF 251
           +++    +  +RNDR W+NS++
Sbjct: 428 IKVEAGELTTLRNDRAWMNSNY 449


>U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical
           protein B0228.7 protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 168 ICHLQTLNTFNRNVLLILVA*K*ELSGERSVCVG*SVKGGRCVRGP 31
           +CH+Q   T+N  +  +L++     + ER   V      G C+ GP
Sbjct: 127 VCHIQAHPTYNEKLRQVLIS-----TAERCQLVHHRTGFGVCIEGP 167


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 266 TSKSSKIRIYPSSVVSYLTDACAR*TDCKSIK 171
           T+  ++IR  P+S ++  +D C+   DC+ ++
Sbjct: 39  TTVGARIRTIPTSNLAECSDHCSASLDCQGVE 70


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 266 TSKSSKIRIYPSSVVSYLTDACAR*TDCKSIK 171
           T+  ++IR  P+S ++  +D C+   DC+ ++
Sbjct: 39  TTVGARIRTIPTSNLAECSDHCSASLDCQGVE 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,328,831
Number of Sequences: 27780
Number of extensions: 59406
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)