Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b24
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   5.7  
08_01_0083 - 604175-605776                                             28   7.6  
08_01_0082 - 588269-588434,590800-591653                               28   7.6  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   7.6  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   10.0 
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   10.0 

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 62  KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 148
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 278 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 165
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 278 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 165
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 159 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 67
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 259 LKNGAGVSNHMWHRLKNDDGDDKPCLN 339
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 771 LQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPF 646
           L  VA  R     LEEL  E+G ++Q+     Y+    E+ F
Sbjct: 840 LAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNF 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,728,745
Number of Sequences: 37544
Number of extensions: 432769
Number of successful extensions: 1218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)