Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b23
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 149 2e-37
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 8e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 8e-09
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 3.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 4.0
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 4.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 5.3
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 7.0
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 24 7.0
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 24 9.3
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 24 9.3
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 24 9.3
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 149 bits (360), Expect = 2e-37
Identities = 66/123 (53%), Positives = 90/123 (73%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G N V L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIH 191
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
+KT LA+T V D+ + +V A+ NF+ +Y+E R+ WGGG++G K+ A +AK K
Sbjct: 192 QKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAK 251
Query: 17 AKA 9
A A
Sbjct: 252 AAA 254
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 54.0 bits (124), Expect = 8e-09
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
+R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 54.0 bits (124), Expect = 8e-09
Identities = 33/100 (33%), Positives = 47/100 (47%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
I G V K V K + LV++A D+ P++++ +P LC VPY K LG +
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 78
K T + V G + SKV E + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 252
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 4.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 137 SKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAK 12
+K+ EA K FNE E+L GGG L K+ A+L+ +
Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIR 63
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 4.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 375 PIRHKHSHQVSREEEGAACGHR 310
P HKH++ +EE +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 67 PPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 234
P Q + SSS S V + S++ S DST + + + T P P+T
Sbjct: 264 PTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT 319
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 224 KSRL-GALVHRKTCTCLALTNVESGDRASFSK 132
KSR G L +R CTC A+ + A FSK
Sbjct: 131 KSRQSGTLNNRTLCTCTAIAGIVFTISAVFSK 162
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 205 SAPRRDLPLTMQYGTPILRH 264
S P ++LP T++ T LRH
Sbjct: 777 SVPEQELPFTLEQATMDLRH 796
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 277 SCQRYAVKWAYHTALSRANPASGHL 203
SC Y + W H A N AS H+
Sbjct: 83 SCYFYFLNWLRHFAPQSKNIASSHI 107
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 288 AGPFPASVMP*NGRTILHCQGQIPPRGTCT 199
AG + A+V+ N + HC IPP CT
Sbjct: 449 AGEY-AAVLNLNSLKLWHCNEAIPPTLLCT 477
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 269 ALCRKMG-VPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 141
A C+ G +PY K + +T LAL N++S D A+
Sbjct: 143 AFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAA 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,299
Number of Sequences: 5004
Number of extensions: 23114
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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