Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b23
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 174 2e-44
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 172 9e-44
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 132 7e-32
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 54 5e-08
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 53 7e-08
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 2e-07
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 50 8e-07
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.025
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.025
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 34 0.033
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 30 0.71
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 0.94
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 5.0
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 27 5.0
12_01_0328 + 2535049-2535213,2536611-2537777 27 6.6
06_03_0694 + 23580116-23580316,23580699-23580701,23581682-235820... 27 6.6
05_05_0200 - 23171803-23171906,23172304-23173951 26 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 174 bits (424), Expect = 2e-44
Identities = 78/125 (62%), Positives = 103/125 (82%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+ EK
Sbjct: 188 KKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREK 247
Query: 17 AKARE 3
A+E
Sbjct: 248 LLAKE 252
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 172 bits (418), Expect = 9e-44
Identities = 75/125 (60%), Positives = 104/125 (83%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
+KT + L LT V++ D+ FSK++EAIK+NFN++++E+RK WGGG++G+KS A+ EK
Sbjct: 173 KKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKSQAKTKAREK 232
Query: 17 AKARE 3
A+E
Sbjct: 233 LLAKE 237
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 132 bits (320), Expect = 7e-32
Identities = 66/125 (52%), Positives = 89/125 (71%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +VH
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVH 157
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+ EK
Sbjct: 158 KKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREK 217
Query: 17 AKARE 3
A+E
Sbjct: 218 LLAKE 222
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 53.6 bits (123), Expect = 5e-08
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 204
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 66
R TC L LT G+ V E +KT++++ E+ + G
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEVAEAGNG 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 53.2 bits (122), Expect = 7e-08
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C +N S R + + AI+
Sbjct: 93 VTRPVIACSVTSNEASNLRDPINNLKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C +N S + + +AI+
Sbjct: 95 VTRPVIACSVTSNEGSQLKTPIQNLKDAIE 124
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 49.6 bits (113), Expect = 8e-07
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 84
K TC L + +V E +K++++ E+
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAEV 142
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.025
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.025
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 34.3 bits (75), Expect = 0.033
Identities = 33/119 (27%), Positives = 51/119 (42%)
Frame = +1
Query: 10 ALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVH 189
ALAF L + A LL PP + S R ++ + + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 190 VLRCTSAPRRDLPLTMQYGTPILRHNAGRKRTSSIGSTS*AMTTSCAFFFSTNLVTVFV 366
+R T D P T++YGT +G+ S+ GST+ T S + S N+ V +
Sbjct: 68 KMRVTWITGGDAPATVEYGT-----TSGQYPFSATGSTN---TYSYVLYHSGNIHDVVI 118
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.9 bits (64), Expect = 0.71
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 179 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAK 12
LA + E SF+ V E + R +EL WGG LGN ++K+EK K
Sbjct: 831 LASSAAEETLTGSFNPVQERRRA----REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 29.5 bits (63), Expect = 0.94
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 16 AFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 159
A SS R L R+PPP LR + R + V A T E +A +P+
Sbjct: 14 AASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 237
G TV L++ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 145 ARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPIL 258
+R P + + H H C + RRD+PL + +P++
Sbjct: 945 SRRPSRSEFKGGHDHRSPCVPSNRRDIPLVRRPPSPVV 982
>12_01_0328 + 2535049-2535213,2536611-2537777
Length = 443
Score = 26.6 bits (56), Expect = 6.6
Identities = 30/119 (25%), Positives = 48/119 (40%)
Frame = +1
Query: 10 ALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVH 189
AL L A+ LLP + S+ R + S + + R+P + A
Sbjct: 6 ALRLVVLLAAAVPLLPPPAASLAVTSTYVRPTARATL-SVLHDGDGRTPQQVHISAVGSD 64
Query: 190 VLRCTSAPRRDLPLTMQYGTPILRHNAGRKRTSSIGSTS*AMTTSCAFFFSTNLVTVFV 366
+R T D P T++YGT +G S+ G+T+ T S + S N+ V +
Sbjct: 65 KMRVTWITDDDAPATVEYGTV-----SGEYPFSAAGNTT---TYSYVLYHSGNIHDVVI 115
>06_03_0694 +
23580116-23580316,23580699-23580701,23581682-23582065,
23582299-23582523
Length = 270
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 7 RALAFSSLAMRALDLLPRTPPPQCLRSSS 93
+A+A+S A ALDLL +TPPP ++S
Sbjct: 73 KAIAWS--AAEALDLLEQTPPPSAGSAAS 99
>05_05_0200 - 23171803-23171906,23172304-23173951
Length = 583
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 76 CLRSSS*RS-LKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDL-PLTMQYGT 249
C RS+ +++ +S + +E R+ D + + + T+ + + PL+ + G
Sbjct: 430 CCRSAEATDCFQWLCCSSCSLAQEVRTADYYDIAEDRSYTEQITARSQHVMTPLSREDGL 489
Query: 250 PILRHNAGRKRTSSIGSTS 306
P+ R N G SS S S
Sbjct: 490 PLFRSNPGSPYRSSTASPS 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,547,408
Number of Sequences: 37544
Number of extensions: 189077
Number of successful extensions: 551
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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