Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b23
         (380 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   203   1e-54
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   2.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   2.2  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   5.0  
AY341195-1|AAR13759.1|  294|Anopheles gambiae laminin protein.         22   8.7  
AY341194-1|AAR13758.1|  294|Anopheles gambiae laminin protein.         22   8.7  
AY341193-1|AAR13757.1|  294|Anopheles gambiae laminin protein.         22   8.7  
AY341192-1|AAR13756.1|  294|Anopheles gambiae laminin protein.         22   8.7  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    22   8.7  
AF117749-1|AAD38335.1|  372|Anopheles gambiae serine protease 14...    22   8.7  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  203 bits (496), Expect = 1e-54
 Identities = 88/125 (70%), Positives = 112/125 (89%)
 Frame = -1

Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
           +R G N+V K+VE+KKAQLV+IAHDVDPIELV++LPALCRKMGVPYCI+KGK+RLG LV+
Sbjct: 142 LRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLVY 201

Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
           RKTCTC+ALT  E+ D+ + +K+VE IKTNFN+R++++R+HWGGG+LG KS AR+AKLEK
Sbjct: 202 RKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKSMARLAKLEK 261

Query: 17  AKARE 3
           AK RE
Sbjct: 262 AKKRE 266


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 143  SFSKVVEAIKTNFNERYEELRKHWG 69
            +FS+ +     NF+  + EL++ WG
Sbjct: 1855 TFSRTIPFFGGNFSPEHTELQRTWG 1879


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 143  SFSKVVEAIKTNFNERYEELRKHWG 69
            +FS+ +     NF+  + EL++ WG
Sbjct: 1856 TFSRTIPFFGGNFSPEHTELQRTWG 1880


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +3

Query: 222 FALDNA-VWYAHFTA*RWQEKDQLN 293
           ++LD    WY    A  W  KDQ++
Sbjct: 230 YSLDEIQTWYESLAAIMWNTKDQIH 254


>AY341195-1|AAR13759.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 HTALSRANPASGHL 203
           +TAL+RA   SGHL
Sbjct: 28  NTALARAKDISGHL 41


>AY341194-1|AAR13758.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 HTALSRANPASGHL 203
           +TAL+RA   SGHL
Sbjct: 28  NTALARAKDISGHL 41


>AY341193-1|AAR13757.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 HTALSRANPASGHL 203
           +TAL+RA   SGHL
Sbjct: 28  NTALARAKDISGHL 41


>AY341192-1|AAR13756.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 244 HTALSRANPASGHL 203
           +TAL+RA   SGHL
Sbjct: 28  NTALARAKDISGHL 41


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 244  HTALSRANPASGHL 203
            +TAL+RA   SGHL
Sbjct: 1167 NTALARAKDISGHL 1180


>AF117749-1|AAD38335.1|  372|Anopheles gambiae serine protease 14D2
           protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 249 RTILHCQGQIPPRGTCTPQDMHMLSSNKCG 160
           R+ L  +  +  +   TP+D  ++  +KCG
Sbjct: 46  RSCLSIRNVLLKKENMTPEDRSLVMKSKCG 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,746
Number of Sequences: 2352
Number of extensions: 6951
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29074284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)