Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b23
(380 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 218 2e-57
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 218 2e-57
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 218 2e-57
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 218 2e-57
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 218 2e-57
AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi p... 62 2e-10
AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA... 62 2e-10
BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p pro... 48 3e-06
AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar pr... 48 3e-06
AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA... 48 3e-06
X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal ... 29 2.0
AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p pro... 29 2.0
AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-P... 29 2.0
AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-P... 29 2.0
M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal degene... 28 4.7
BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p pro... 28 4.7
AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA... 28 4.7
AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD... 28 4.7
AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC... 28 4.7
AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB... 28 4.7
BT023913-1|ABA81847.1| 284|Drosophila melanogaster AT13385p pro... 27 8.2
BT012336-1|AAS77461.1| 284|Drosophila melanogaster AT16075p pro... 27 8.2
AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p pro... 27 8.2
AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB ... 27 8.2
AE013599-633|AAM68841.1| 284|Drosophila melanogaster CG30366-PA... 27 8.2
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 218 bits (532), Expect = 2e-57
Identities = 98/125 (78%), Positives = 117/125 (93%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
+ +GTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR 200
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
RKTCT LALT V++ D+A+F KV+EA+KTNFNER+EE+R+HWGGG+LG+KS ARI+KLE+
Sbjct: 201 RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLER 260
Query: 17 AKARE 3
AKARE
Sbjct: 261 AKARE 265
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 218 bits (532), Expect = 2e-57
Identities = 98/125 (78%), Positives = 117/125 (93%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
+ +GTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR 200
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
RKTCT LALT V++ D+A+F KV+EA+KTNFNER+EE+R+HWGGG+LG+KS ARI+KLE+
Sbjct: 201 RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLER 260
Query: 17 AKARE 3
AKARE
Sbjct: 261 AKARE 265
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 218 bits (532), Expect = 2e-57
Identities = 98/125 (78%), Positives = 117/125 (93%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
+ +GTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR 200
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
RKTCT LALT V++ D+A+F KV+EA+KTNFNER+EE+R+HWGGG+LG+KS ARI+KLE+
Sbjct: 201 RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLER 260
Query: 17 AKARE 3
AKARE
Sbjct: 261 AKARE 265
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 218 bits (532), Expect = 2e-57
Identities = 98/125 (78%), Positives = 117/125 (93%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
+ +GTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR 200
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
RKTCT LALT V++ D+A+F KV+EA+KTNFNER+EE+R+HWGGG+LG+KS ARI+KLE+
Sbjct: 201 RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLER 260
Query: 17 AKARE 3
AKARE
Sbjct: 261 AKARE 265
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 218 bits (532), Expect = 2e-57
Identities = 98/125 (78%), Positives = 117/125 (93%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 198
+ +GTNTVTKL+E+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVR 200
Query: 197 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEK 18
RKTCT LALT V++ D+A+F KV+EA+KTNFNER+EE+R+HWGGG+LG+KS ARI+KLE+
Sbjct: 201 RKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLER 260
Query: 17 AKARE 3
AKARE
Sbjct: 261 AKARE 265
>AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi
protein.
Length = 127
Score = 62.1 bits (144), Expect = 2e-10
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 34 LRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACG 93
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C TN S ++ + + + I+
Sbjct: 94 VSRPIVACSVTTNEGSQLKSQITSIQQEIE 123
>AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA
protein.
Length = 127
Score = 62.1 bits (144), Expect = 2e-10
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 34 LRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACG 93
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R C TN S ++ + + + I+
Sbjct: 94 VSRPIVACSVTTNEGSQLKSQITSIQQEIE 123
>BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p
protein.
Length = 160
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 203 VHRKTCTCLALTNVESGD 150
V R T L N E D
Sbjct: 127 VKRGTVALLVRQNEEYKD 144
>AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar
protein NHP2 protein.
Length = 160
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 203 VHRKTCTCLALTNVESGD 150
V R T L N E D
Sbjct: 127 VKRGTVALLVRQNEEYKD 144
>AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA
protein.
Length = 160
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 203 VHRKTCTCLALTNVESGD 150
V R T L N E D
Sbjct: 127 VKRGTVALLVRQNEEYKD 144
>X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal
protein S12 protein.
Length = 151
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 53 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 105
>AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p
protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-PC,
isoform C protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-PB,
isoform B protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 368 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 210
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal
degeneration C protein protein.
Length = 661
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 622 KTATDPVTLLADKISKNTLVVEHDIDPTD 650
>BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p
protein.
Length = 603
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 564 KTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA,
isoform A protein.
Length = 603
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 564 KTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD,
isoform D protein.
Length = 661
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 622 KTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC,
isoform C protein.
Length = 661
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 622 KTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB,
isoform B protein.
Length = 661
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 374 RSGTNTVTKLVEKKKAQLVVIAHDVDPIE 288
++ T+ VT L +K +V+ HD+DP +
Sbjct: 622 KTATDPVTLLADKISKNTLVVEHDIDPTD 650
>BT023913-1|ABA81847.1| 284|Drosophila melanogaster AT13385p
protein.
Length = 284
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 272 PALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 168
P LC K+ PY K R + ++ C CL T
Sbjct: 233 PTLCTKLRAPYPCYSEKIRGTRPLRKRECLCLETT 267
>BT012336-1|AAS77461.1| 284|Drosophila melanogaster AT16075p
protein.
Length = 284
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 272 PALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 168
P LC K+ PY K R + ++ C CL T
Sbjct: 233 PTLCTKLRAPYPCYSEKIRGTRPLRKRECLCLETT 267
>AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p
protein.
Length = 1168
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 104 NERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 3
NER+E H GGGV+ K ++ K E+ +E
Sbjct: 671 NERFE----HLGGGVIAKKPQEKLEKKEQPSKKE 700
>AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB
protein.
Length = 1168
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 104 NERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 3
NER+E H GGGV+ K ++ K E+ +E
Sbjct: 671 NERFE----HLGGGVIAKKPQEKLEKKEQPSKKE 700
>AE013599-633|AAM68841.1| 284|Drosophila melanogaster CG30366-PA
protein.
Length = 284
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 272 PALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALT 168
P LC K+ PY K R + ++ C CL T
Sbjct: 233 PTLCTKLRAPYPCYSEKIRGTRPLRKRECLCLETT 267
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,240
Number of Sequences: 53049
Number of extensions: 308796
Number of successful extensions: 1085
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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