Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b23
(380 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 165 9e-42
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 165 9e-42
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 3e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 1.1
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 3.4
Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical pr... 27 4.5
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr... 26 7.9
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 26 7.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 165 bits (401), Expect = 9e-42
Identities = 71/126 (56%), Positives = 101/126 (80%)
Frame = -1
Query: 380 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 201
T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 195
Query: 200 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLE 21
RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A+ K+E
Sbjct: 196 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIE 255
Query: 20 KAKARE 3
+A+AR+
Sbjct: 256 RARARD 261
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 165 bits (401), Expect = 9e-42
Identities = 71/126 (56%), Positives = 101/126 (80%)
Frame = -1
Query: 380 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 201
T+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVV 175
Query: 200 HRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLE 21
RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+A+ K+E
Sbjct: 176 RRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIE 235
Query: 20 KAKARE 3
+A+AR+
Sbjct: 236 RARARD 241
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 3e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -1
Query: 377 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 204
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 203 VHRKTCTCLALTNVESGDRASFSKVVEAIK 114
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 3e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -1
Query: 380 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 201
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 200 HRKTCTCLALTNVESGDRASFSKVVEAIK 114
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 34 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 183
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 34 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 183
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 34 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 183
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 34 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 183
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 34 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 183
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 100 SLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPILRHNAGRK 279
SL+F+ S+ EK + +P + L + +PL ++ TP+L A +
Sbjct: 121 SLRFLSQLSSVAEKVS-TPSEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPLLESLASDQ 179
Query: 280 RTSSIGS 300
++SS S
Sbjct: 180 QSSSTSS 186
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 115 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 255
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z72512-2|CAA96664.1| 322|Caenorhabditis elegans Hypothetical
protein R07B5.4 protein.
Length = 322
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 161 PHLLELSMCMSCGVQVPRGGICP*QCSMVRPFYGITLA 274
PHLL + C G+ P G I M P Y I A
Sbjct: 170 PHLLLTTSCFQMGIPYPFGSIVITASRMDMPVYAIIYA 207
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 200 HRKTCTCLALTNVE--SGDRASFSKVVEAIKTNFNERY 93
HRKTC+C+ N + + F + + + FN++Y
Sbjct: 254 HRKTCSCIFELNEKEYQNIKKQFDEQLNEVVEQFNQKY 291
>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
protein F20G4.1 protein.
Length = 1615
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 239 CIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEA 120
C +KG + + +C ALT +GD S ++++E+
Sbjct: 566 CRIKGDVDIYMMARNGSCLDAALTFAHNGDIDSLTRIIES 605
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 302 VDPIELVLFLPALCRKMGVPYCIVKGKS 219
+DP+ ++L LPAL R++ P +G S
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNS 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,571,597
Number of Sequences: 27780
Number of extensions: 144760
Number of successful extensions: 453
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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