Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b21
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   4.1  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   9.4  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  RIKLSSHKQTINSY*ITAGDLLLVSSVIDINW 173
           R+K S   +T N   +  GDLLLV   ID  W
Sbjct: 427 RMKYSFEPETENELKLKKGDLLLVLKEIDEGW 458


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 556 MKLRNKDCFFLLCRIFFLKKRCLFLLHNHKNLVVQSSM 443
           MKLR+K   +L      ++  C FL HN +N    S++
Sbjct: 1   MKLRDKWKIYLGLTTIKVQCPCFFLFHNDENRTTTSNL 38


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 493 CLFLLHNHKNLVVQSSMYTLMIGLC*ITETARAAMCR 383
           C+  LH HKN ++Q+S +    G   +   +R + CR
Sbjct: 240 CIATLHGHKNTIMQAS-FQKNFGSNYLATVSRDSTCR 275


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 568 CVFFMKLRNKDCF 530
           C FF+ LR KDCF
Sbjct: 497 CGFFLPLRRKDCF 509


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 487 FLLHNHKNLVVQSSMYTLMI 428
           F+L  H NL  +SSMY L I
Sbjct: 853 FMLEKHTNLKEESSMYWLRI 872


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 46  TKVSXHNAPNSV*SYHHTNKRLIPTR*QQVICFWFRQSLTLIGLYN 183
           T +  H AP S  + H + K+++     +++ +W   +   I  YN
Sbjct: 226 TSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAISTYN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,584
Number of Sequences: 5004
Number of extensions: 48938
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)