Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b21
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 31 0.79
05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,210... 30 1.4
03_03_0041 - 14007687-14009381 30 1.4
08_02_0258 + 14968858-14970648 30 1.8
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 2.4
05_01_0031 + 199502-200431 29 3.2
01_01_0490 + 3620523-3623403,3623524-3623996 29 3.2
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 29 4.2
01_05_0610 - 23636097-23638958 29 4.2
09_04_0524 + 18321110-18323978,18324098-18324576 28 5.6
05_01_0493 + 4113869-4116728,4116859-4117370 28 5.6
02_04_0610 + 24335153-24337724,24337835-24338256 28 5.6
02_01_0120 + 884467-887649 28 5.6
08_01_0914 + 9010613-9013316,9013537-9013748 28 7.4
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 28 7.4
09_02_0456 - 9525067-9525422,9525679-9528226 27 9.7
08_02_1110 + 24371934-24374763,24375034-24375518 27 9.7
08_02_0482 - 17643603-17643955,17644024-17646604 27 9.7
03_02_0233 - 6622345-6622538,6623526-6624120 27 9.7
02_02_0636 + 12463660-12465204 27 9.7
01_01_0075 - 575806-576984,578024-578278 27 9.7
>01_02_0042 -
10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 31.1 bits (67), Expect = 0.79
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 127 QQVICFWFRQSLT--LIGLYNGKKYQCMVECGLGQPLGRFSECVISYCEARRVHFGASWL 300
+Q I F+ + + T ++G +G +++ +G+ +G+F + V+++ V F WL
Sbjct: 158 RQEIAFFDKYTNTGEVVGRMSGDTV--LIQDAMGEKVGKFIQLVVTFLGGFIVAFAQGWL 215
Query: 301 VYLV--GTLPP 327
+ LV T+PP
Sbjct: 216 LTLVMMATIPP 226
>05_01_0271 +
2105122-2105470,2105557-2105954,2106035-2106273,
2107120-2107645,2107817-2108090,2108197-2109056,
2109201-2109467,2109711-2109974,2110063-2110356,
2110455-2110814
Length = 1276
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 127 QQVICFWFRQSLT--LIGLYNGKKYQCMVECGLGQPLGRFSECVISYCEARRVHFGASWL 300
+Q + F+ + + T ++G +G +++ +G+ +G+F + ++++ V F WL
Sbjct: 142 RQEVAFFDKHTNTGEVVGRMSGDTV--LIQDAMGEKVGKFVQLLVTFLGGFGVAFAQGWL 199
Query: 301 VYLV--GTLPP 327
+ LV T+PP
Sbjct: 200 LTLVMLATIPP 210
>03_03_0041 - 14007687-14009381
Length = 564
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 223 QPLGRFSECVIS-YCEARRVHFGASWLV-YLVGTLPPPAGAFDSAMSV 360
+PL R ++ +I+ +C+ARR G +WL L L P F+S + +
Sbjct: 462 EPLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVEL 509
>08_02_0258 + 14968858-14970648
Length = 596
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 404 GTGGDVPTRIERDWSTLIALSNAPAGGG 321
G GG VPT++E D + +A P GGG
Sbjct: 7 GAGG-VPTKLEHDDAAAVAAEREPCGGG 33
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 304 YLVGTLPPPAGAFDSAMSVDQSRSILVGTSP 396
YL GT+PP G + S+D S ++LVG P
Sbjct: 464 YLNGTVPPSLGDCANLESIDLSFNLLVGKIP 494
>05_01_0031 + 199502-200431
Length = 309
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPPVPFQ*FN 420
L G +PP A +D SR+ L G PP F N
Sbjct: 154 LTGAIPPSLAALPFLSGIDISRNRLTGPLPPALFSKLN 191
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 295 WLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSP 396
W L GT+PP G S+D S++ L G P
Sbjct: 402 WANQLTGTIPPEIGGCAGLESLDLSQNALTGPIP 435
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 273 ARAFRGVVVSVSRRDPATTSRRIRQCYERRPVALNS-RRHIAARAVS 410
AR VV S ATTS R+++ PVA + RH+AA A S
Sbjct: 21 ARRAASVVAMPSSSSSATTSLRMKRQAACEPVACRAVARHVAAAAAS 67
>01_05_0610 - 23636097-23638958
Length = 953
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 313 GTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
GTLP G+ + S+D S S VGT PP
Sbjct: 130 GTLPEFLGSLHNLRSLDLSWSTFVGTVPP 158
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
L G +PP G + ++D S++ L G PP
Sbjct: 120 LTGEIPPELGEYGELATLDVSKNQLTGAIPP 150
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 295 WLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
W LVG +PP G+ + VD S + L G PP
Sbjct: 301 WQNQLVGVIPPELGSCAALAVVDLSLNGLTGHIPP 335
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSP 396
L G +PPP G + + +D SR+ L G P
Sbjct: 151 LEGAIPPPIGRLRNLVYIDLSRNNLTGIIP 180
>02_01_0120 + 884467-887649
Length = 1060
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 RVHF-GASWLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
RVH SW L G +PP S S+D S + L G PP
Sbjct: 581 RVHVVDLSWNA-LSGPIPPELSGMSSVESLDVSHNALSGAIPP 622
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
++GT+P F+ SV+ S ++ GT PP
Sbjct: 390 IIGTIPEDLWKFNKLTSVNLSYNLFTGTLPP 420
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
LVGT+PP G + +R+ LVG PP
Sbjct: 160 LVGTIPPSLGGLPYLSTFILARNKLVGNIPP 190
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
L G++PP G + + +D S + L G PP
Sbjct: 214 LTGSIPPSVGKLTNLVDLDLSSNNLTGEIPP 244
>08_02_1110 + 24371934-24374763,24375034-24375518
Length = 1104
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 295 WLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSP 396
W LVGT+PP G + +D S + L G P
Sbjct: 304 WQNQLVGTIPPEIGNCKELVLIDLSLNELTGPIP 337
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSP 396
LVG +PP G+ S +++D S + L G P
Sbjct: 205 LVGDIPPSIGSLKSLVNLDLSTNNLTGEIP 234
>03_02_0233 - 6622345-6622538,6623526-6624120
Length = 262
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 377 IERDWSTLIALSNAPAGGGRVP 312
+E+DWS L A + A A GG +P
Sbjct: 66 VEKDWSFLDAAAAAAAAGGSLP 87
>02_02_0636 + 12463660-12465204
Length = 514
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 409 ETARAAMCRRE--LSATGR--RS*HCRMRRLVVAGSRRDTLTTTPRNARAE 269
E A A R+E L + G+ H +RR+ AG R +TPR A AE
Sbjct: 85 EAAAAGRTRKESFLDSAGKDVARIHTMLRRVAGAGGGRAATNSTPRRALAE 135
>01_01_0075 - 575806-576984,578024-578278
Length = 477
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 307 LVGTLPPPAGAFDSAMSVDQSRSILVGTSPP 399
L G+LP G + +D S ++L G+ PP
Sbjct: 244 LTGSLPSSLGGLKGLLKMDLSNNLLQGSLPP 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,633
Number of Sequences: 37544
Number of extensions: 334632
Number of successful extensions: 925
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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