Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b21
         (649 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3000|AAF57476.3| 1222|Drosophila melanogaster CG8920-PC...    31   1.0  
AE013599-2999|AAF57477.3| 1222|Drosophila melanogaster CG8920-PB...    31   1.0  
AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p pro...    30   3.1  
AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA...    30   3.1  
AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC...    29   7.2  

>AE013599-3000|AAF57476.3| 1222|Drosophila melanogaster CG8920-PC,
            isoform C protein.
          Length = 1222

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 325  PPAGAFDSAMSVDQSRSILVGTSPPVPFQ*FNISLSLVCTYYSVLLNFCDYEA 483
            P  G+F S  S   S S LV T+PPV  +    + S   T+ S++L   DYEA
Sbjct: 978  PRRGSFSSVFSNQSSSSDLVATTPPVTPEKKPSARSTGSTFSSLMLK--DYEA 1028


>AE013599-2999|AAF57477.3| 1222|Drosophila melanogaster CG8920-PB,
            isoform B protein.
          Length = 1222

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = +1

Query: 325  PPAGAFDSAMSVDQSRSILVGTSPPVPFQ*FNISLSLVCTYYSVLLNFCDYEA 483
            P  G+F S  S   S S LV T+PPV  +    + S   T+ S++L   DYEA
Sbjct: 978  PRRGSFSSVFSNQSSSSDLVATTPPVTPEKKPSARSTGSTFSSLMLK--DYEA 1028


>AY058639-1|AAL13868.1|  391|Drosophila melanogaster LD33876p
           protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 259 YCEARRVHFGASWLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSPPVPFQ*FN 420
           Y   +R+    +W+  +VG +PP  G    A ++D    IL G      F  FN
Sbjct: 193 YTPMKRISIVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFN 246


>AE014134-1840|AAF52915.1|  391|Drosophila melanogaster CG5037-PA
           protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 259 YCEARRVHFGASWLVYLVGTLPPPAGAFDSAMSVDQSRSILVGTSPPVPFQ*FN 420
           Y   +R+    +W+  +VG +PP  G    A ++D    IL G      F  FN
Sbjct: 193 YTPMKRISIVNTWVGSIVGAIPPLMGWAGCAATLDAGAMILAGVLYAWQFPHFN 246


>AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC
            protein.
          Length = 4699

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -1

Query: 427  GLC*ITETARAAMCRRELSATGRRS*HCRMRRLVVAGSRRDTLTTTPR 284
            G C I+ET     C      TG +  HCR       G  R+TLT TP+
Sbjct: 4302 GSCLISET-EGMKCSCPKMFTGEQCEHCRNLTCENGGICRETLTGTPQ 4348


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,102,968
Number of Sequences: 53049
Number of extensions: 569421
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)