Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b21
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclas...    27   8.7  
AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    27   8.7  
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 421 ISLSLVCTYYSVLLNFCDY 477
           +S+  +CTYY+VLLN C Y
Sbjct: 115 LSVLGLCTYYAVLLNVCVY 133


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 330 WWWQGPDEIH*PRRPEMHAPSFTIAYNALAKPAERLAKPALHHAL 196
           WW+    EI  P  P +   +   AYN +       A   LHH L
Sbjct: 75  WWYNAYTEIREPLAPYVSFGAMNTAYNCVDGGQVSRAADVLHHWL 119


>Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical
           protein F32B6.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   KYFNVYSRLQIKIQRYLPTTP 70
           KY   + RL  K+Q Y PT P
Sbjct: 321 KYIQAFKRLMTKMQEYFPTDP 341


>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -3

Query: 359 TLIALSNAPAGGGRVP--TRYTNHDAPKCTR--RASQ*LITHSLNRPSGWPSPHSTMH*Y 192
           T + L N   G GR    TR   H  P  T+  R+S+  I HSL   SG+ +P  ++  +
Sbjct: 420 TELRLPNLTKGEGRNENMTRVKQHVIPIGTKAKRSSECSIKHSLGGHSGYSTPERSVEGF 479

Query: 191 FFPL 180
           +  L
Sbjct: 480 YHAL 483


>U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclase
           protein 11 protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 49  KVSXHNAPNSV*SYHHTNKRLIPTR*QQVICFWFRQSLTLIGLYNGKKYQCMVECGLGQP 228
           + S  N P  +  +     R++P         W  ++LT +G++NG+  Q   ECG    
Sbjct: 317 QASSSNGPIPLPEWATLAARMLPDGKGNYSIIW--KNLTQLGIFNGELPQSKPECGFNNE 374

Query: 229 L 231
           L
Sbjct: 375 L 375


>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 259 YCEARRVHFGASWLVYLVGTLPPPAG 336
           Y   +R H G +W   +VG +PP  G
Sbjct: 209 YTPMKRSHIGCTWAGAVVGAIPPLMG 234


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 259 YCEARRVHFGASWLVYLVGTLPPPAG 336
           Y   +R H G +W   +VG +PP  G
Sbjct: 209 YTPMKRSHIGCTWAGAVVGAIPPLMG 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,499
Number of Sequences: 27780
Number of extensions: 290940
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)