Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b18
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 140 1e-33
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 100 1e-21
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 98 7e-21
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 83 2e-16
12_02_0044 - 12807372-12807555,12807782-12807840,12807943-128080... 64 1e-10
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 34 0.16
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 31 1.1
04_04_1339 + 32760424-32760584,32762428-32764462 30 2.7
11_06_0377 - 22900042-22900452,22900527-22902236 29 3.5
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 4.6
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 28 8.1
>01_04_0038 - 15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 140 bits (339), Expect = 1e-33
Identities = 90/272 (33%), Positives = 137/272 (50%), Gaps = 10/272 (3%)
Frame = -1
Query: 844 GSTLFKFSYFGEEAYLTQSFQLYLETCLATXGDVYCIAQSYRAEQSRTRRHLAEYSHVEA 665
G+ ++ +F +A+LT S QL +ET VY ++RAE S T RHLAE+ VE
Sbjct: 285 GTVAYENDFFKRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEP 344
Query: 664 ECPFITFXXXXXXXXXXXXXXXXXXLASPEGQLVY--------ELXXXXXXXXXXXKRMT 509
E F L + + + +R++
Sbjct: 345 EIAFANLQDDMNCAERYVQYLCKWLLEHCREDMEFMVKNYDKTAIERLELVSSTPFQRIS 404
Query: 508 YIEAIEYLRANNIT-KEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEIKSFYMS 335
Y +A+E L+ N+T K+ + E+G D+ ER +T+ I P+++ +P EIK+FYM
Sbjct: 405 YTKAVELLK--NVTDKKFENKVEWGIDLASEHERYLTEVIFKKPVIVYNYPKEIKAFYM- 461
Query: 334 RCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGS 155
R DD++ ++DVL+P VGE+VGGS R + L + G+ PY WY D R+FGS
Sbjct: 462 RLNDDQKTVAAMDVLVPKVGELVGGSQREERLDLLKTRIQDAGLPLEPYEWYLDLRRFGS 521
Query: 154 VPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 59
V H G+GLG ER + + +IRDV +PR+
Sbjct: 522 VKHSGFGLGFERMILFATGLENIRDVIPFPRY 553
>02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 100 bits (240), Expect = 1e-21
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 6/274 (2%)
Frame = -1
Query: 844 GSTLFKFSYFGEEAYLTQSFQLYLETCLATXGD-VYCIAQSYRAEQSRTRRHLAEYSHVE 668
G+ +FK Y G+ A L QS QL+ + + + V+ + +RAE S T RHL E+ ++
Sbjct: 238 GAAVFKLDYNGQPACLAQSPQLHKQMAICGGFERVFEVGPVFRAEDSNTHRHLCEFVGLD 297
Query: 667 AECPFITFXXXXXXXXXXXXXXXXXXLASPEGQLVYELXXXXXXXXXXXKRMTYIEAIEY 488
E L + + + T IEY
Sbjct: 298 MEMAIKGHYSEVCDVVDRLFVAMFDHLNKNCAKELEAINRQYPFKPLKYLPKTL--RIEY 355
Query: 487 LRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-----LLCKFPAEIKSFYMSRCVD 323
+ KE G E D+ E+K+ + + +LC++P+ ++ FY C D
Sbjct: 356 DEGIRMLKEAGVHVEAMGDLNTESEKKLGELVHTKYDTDFYMLCRYPSAVRPFYTMPCSD 415
Query: 322 DRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHG 143
D R + S DV + G EI+ G+ R+ E L + GID Y D ++G+ PHG
Sbjct: 416 DPRYSNSFDVFVRGE-EIISGAQRVHVPEVLARQAEERGIDVGSIAAYVDAFRYGAPPHG 474
Query: 142 GYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 41
G+G+GLER + +IR L+PR R P
Sbjct: 475 GFGVGLERVVMLFCGLGNIRKASLFPRDPRRLNP 508
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 98.3 bits (234), Expect = 7e-21
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Frame = -1
Query: 514 MTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPAEIKSFY 341
++Y +AIE L + K+ ++G D+ ER +T+ G P+++ +P EIK+FY
Sbjct: 397 LSYSDAIELLVGSK--KKFEFPVKWGLDLQSEHERYITEVAFGGRPVIIRDYPKEIKAFY 454
Query: 340 MSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKF 161
M R DD + ++D+L+P VGE++GGS R + L ++ Y+WY D R++
Sbjct: 455 M-RENDDGKTVAAMDLLVPRVGELIGGSQREERLDYLEARLDELNLNKDSYWWYLDLRRY 513
Query: 160 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 62
GSVPH G+GLG ER + + +IRD +PR
Sbjct: 514 GSVPHAGFGLGFERLVQFATGMDNIRDTIPFPR 546
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = -1
Query: 820 YFGEEAYLTQSFQLYLETCLATXGDVYCIAQSYRAEQSRTRRHLAEY 680
+F + A+LT S QL ET DVY ++RAE S T RHLAE+
Sbjct: 312 FFCKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEF 358
>02_05_0343 + 28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 83.4 bits (197), Expect = 2e-16
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 10/254 (3%)
Frame = -1
Query: 844 GSTLFKFSYFGEEAYLTQSFQLYLETCLATXGD-VYCIAQSYRAEQSRTRRHLAEYSHVE 668
G+ +FK Y G+ A L QS QLY + + + V+ + +RAE S T RHL E+ ++
Sbjct: 279 GAAVFKLQYNGQPACLAQSPQLYKQMAICGGFERVFEVGPVFRAENSNTHRHLCEFVGLD 338
Query: 667 AECP----FITFXXXXXXXXXXXXXXXXXXLASPEGQLVYELXXXXXXXXXXXKRMTYIE 500
AE + + + ++TY E
Sbjct: 339 AEMEIKEHYFEVCDIIDGLFVAIFKHLNENCKKELETINRQYPFEPLKYLEKTLKLTYEE 398
Query: 499 AIEYLRANNITKEDGSFYEFGEDIPEMPERKM----TDAIGVPI-LLCKFPAEIKSFYMS 335
I+ L KE G+ E D+ E+K+ + G +L ++P ++ FY
Sbjct: 399 GIQML------KEAGTEIEPMGDLNTEAEKKLGRLVKEKYGTEFFILYRYPLAVRPFYTM 452
Query: 334 RCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGS 155
C D+ + S DV + G EI+ G+ RI E L + GID S Y + +G+
Sbjct: 453 PCYDNPAYSNSFDVFIRGE-EIISGAQRIHLPELLTKRATECGIDASTISSYIESFSYGA 511
Query: 154 VPHGGYGLGLERFL 113
PHGG+G+GLER L
Sbjct: 512 PPHGGFGVGLERVL 525
>12_02_0044 - 12807372-12807555,12807782-12807840,12807943-12808072,
12808160-12808224,12808318-12808506,12808574-12809119,
12809258-12809497,12809598-12810032
Length = 615
Score = 64.1 bits (149), Expect = 1e-10
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 11/264 (4%)
Frame = -1
Query: 820 YFGEEAYLTQSFQLYLETCLATXGDVYCIAQSYRAEQSR--TRRHLAEYSHVEAECPFIT 647
+F AYLT L+LET VY + ++AE + R LAE V+ E F
Sbjct: 346 FFHRPAYLTPCHTLHLETYACALSSVYTFSPVFQAESESLDSDRSLAERWTVDVELAFAE 405
Query: 646 FXXXXXXXXXXXXXXXXXXLASPEGQLVYELXXXXXXXXXXXKRMTYI---EAIEYLRAN 476
+L + + I+Y A
Sbjct: 406 LEDAISCAEDCVKSLCSTVSKDCSDELKFLSSNQAGDATSSVIEAAVSSPWQKIKYTEAV 465
Query: 475 NITKE--DGSF---YEFGEDIPEMPERKMTDAI-GVPILLCKFPAEIKSFYMSRCVDDRR 314
N + D +F E G + + + D + P+++ +P ++K FY +R +D +
Sbjct: 466 NTLLQVTDKTFESKLELGMPLSRVHLSYLADDLYKKPVIIYDYPKQLKPFY-ARLKEDLK 524
Query: 313 LTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYG 134
+ D+++P VG + G+ + + L + G+ WY D R+ G+V H G+
Sbjct: 525 TVSAFDLVVPKVGIVACGAQKEERMDNLTSRIEESGLQVEQLEWYLDTRRHGTVKHSGFS 584
Query: 133 LGLERFLCWLLDRYHIRDVCLYPR 62
+ LE + ++ +RD + R
Sbjct: 585 IDLESLILFVTGLKDVRDAIPFHR 608
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 160 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR-FLERCT-P*APLPDDVSSL 8
G+ PHGG GL+R + L IRDV +P+ +C+ AP P D L
Sbjct: 639 GAPPHGGIAYGLDRLVMLLAGENSIRDVIAFPKTTTAQCSLTKAPSPVDPQQL 691
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 166 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 65
++G P G GLG++R + L + IRDV +P
Sbjct: 621 EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 654
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 372 HSSIGTPMASVIFRSGISGMSSPNS*KDPSSFVMLL 479
HS+I + MAS + SG + +S P KDP FV L
Sbjct: 301 HSTIRSVMASHVKESGKALVSDPEKIKDPVEFVQRL 336
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 473 HYEGRRILLRVWRGHPGNAGAEDDGRHWRAD 381
H E LRV +GH +AG +DD WR +
Sbjct: 37 HNEALHGELRVRQGHEVDAGGDDDDEAWRGE 67
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 697 SSCETAPLGTTARCSKRHPXSPDTFXGTAESFELDKLLP 813
+SC T L TA S HP S + A +E + LP
Sbjct: 358 TSCPTVTLDLTAPHSLLHPSSASPYAAAAAGYESSRALP 396
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 166 KFGSVPHGGYGLGLERFLCWLLDRYHIR 83
++G P GG+GLG++R L D +I+
Sbjct: 563 EYGLPPTGGWGLGIDRLTMLLTDSQNIK 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,878
Number of Sequences: 37544
Number of extensions: 381799
Number of successful extensions: 1169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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