Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b18
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 342 2e-94
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 104 7e-23
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 95 6e-20
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 40 0.003
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 34 0.11
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 34 0.11
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 34 0.11
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 31 0.78
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 31 0.78
Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical p... 29 5.5
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 342 bits (841), Expect = 2e-94
Identities = 163/269 (60%), Positives = 190/269 (70%), Gaps = 1/269 (0%)
Frame = -1
Query: 844 GSTLFKFSYFGEEAYLTQSFQLYLETCLATXGDVYCIAQSYRAEQSRTRRHLAEYSHVEA 665
GSTLF Y+GE AYLTQS QLYLETC A GDVYCI+QSYRAE+SRTRRHL+EY HVEA
Sbjct: 277 GSTLFGLDYYGEPAYLTQSSQLYLETCNAALGDVYCISQSYRAEKSRTRRHLSEYQHVEA 336
Query: 664 ECPFITFXXXXXXXXXXXXXXXXXXLASPEGQLVYE-LXXXXXXXXXXXKRMTYIEAIEY 488
EC FITF LA P + + E + KRM Y EAIE+
Sbjct: 337 ECAFITFDQLMDRIEALVCDTVDRLLADPVTKSLIEFVNPGYKAPARPFKRMPYKEAIEW 396
Query: 487 LRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLT 308
L+ N++ E G + +GEDI E ER+MTD IGVPILL +FP IK+FYM RC DD LT
Sbjct: 397 LQKNDVRNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHGIKAFYMPRCADDNELT 456
Query: 307 ESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLG 128
ESVD+LMPGVGEIVGGSMRIW ++L+ +++ G+D YYWY DQRK+GSVPHGGYGLG
Sbjct: 457 ESVDLLMPGVGEIVGGSMRIWKEDQLLAAFEKGGLDSKNYYWYMDQRKYGSVPHGGYGLG 516
Query: 127 LERFLCWLLDRYHIRDVCLYPRFLERCTP 41
LERF+CWL D HIRDVCLYPRF+ RC P
Sbjct: 517 LERFICWLTDTNHIRDVCLYPRFVGRCAP 545
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical protein
B0464.1 protein.
Length = 531
Score = 104 bits (250), Expect = 7e-23
Identities = 79/274 (28%), Positives = 121/274 (44%), Gaps = 6/274 (2%)
Frame = -1
Query: 844 GSTLFKFSYFGEEAYLTQSFQLYLETCLATXGD-VYCIAQSYRAEQSRTRRHLAEYSHVE 668
G+ +F+ SYF AYL QS QLY + +A + VY I +RAE S T RH+ E+ ++
Sbjct: 261 GANVFEVSYFKGSAYLAQSPQLYKQMAIAGDFEKVYTIGPVFRAEDSNTHRHMTEFVGLD 320
Query: 667 AECPF-ITFXXXXXXXXXXXXXXXXXXLASPEGQLVY---ELXXXXXXXXXXXKRMTYIE 500
E F + + + ++ + + Y +
Sbjct: 321 LEMAFNFHYHEVMETIAEVLTQMFKGLQQNYQDEIAAVGNQYPAEPFQFCEPPLILKYPD 380
Query: 499 AIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-LLCKFPAEIKSFYMSRCVD 323
AI LR N I E G + + + + + + +L KFP ++ FY
Sbjct: 381 AITLLRENGI--EIGDEDDLSTPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPFYTMPDAH 438
Query: 322 DRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHG 143
D R + S D+ M G EI+ G+ RI D + L+E K +D + Y D K+G PH
Sbjct: 439 DERYSNSYDMFMRGE-EILSGAQRIHDADMLVERAKHHQVDLAKIQSYIDSFKYGCPPHA 497
Query: 142 GYGLGLERFLCWLLDRYHIRDVCLYPRFLERCTP 41
G G+GLER L ++IR L+PR +R TP
Sbjct: 498 GGGIGLERVTMLFLGLHNIRLASLFPRDPKRLTP 531
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 95.1 bits (226), Expect = 6e-20
Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 3/240 (1%)
Frame = -1
Query: 811 EEAYLTQSFQLYLETCLATXGDVYCIAQSYRAEQSRTRRHLAEYSHVEAECPFI-TFXXX 635
E +L+ S QL+LE ++ VY + S+RAE+ ++ HL+E+ +EAE F+ T
Sbjct: 176 EPMFLSVSSQLHLEAMVSRLQRVYILGPSFRAERQQSHAHLSEFHMLEAEVAFVETIDEM 235
Query: 634 XXXXXXXXXXXXXXXLASPEGQLVYELXXXXXXXXXXXKRMTYIEAIEYL--RANNITKE 461
+S + R+ Y EA+ L + + +T +
Sbjct: 236 CTLVESYIQHMISYLNSSKLEPETAIIGSKIPISNIKFPRIRYDEAVHLLALKGSKVTAK 295
Query: 460 DGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPG 281
G + D+ ++ + PI + +P K FYM+R D +LT S D+L+PG
Sbjct: 296 SGFSKKNELDLVKLHDDH-------PIFVTHYPVGQKPFYMAR---DGQLTLSFDLLVPG 345
Query: 280 VGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLL 101
+GE+ GGS+R EEL + GID WY + R+ G P GG+G+G ER L +L+
Sbjct: 346 IGELAGGSLREQSAEELQR--RGCGID-----WYLEMRRRGQPPTGGFGIGFERMLQYLI 398
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -1
Query: 298 DVLMPGVGEIVGGSMRIWDHEELMEGYKREGIDPSPYYWYTDQRKFGSVPHGGYGLGLER 119
D+++ GV E+ GGS+RI + E K G + G+ PHGG+ LGL+R
Sbjct: 479 DLVINGV-EMGGGSIRIENSEIQRHVLKVLGEPTDEMEHLLNALSHGAPPHGGFALGLDR 537
Query: 118 FLCWLLDRYH----IRDVCLYPR 62
F+ L + +RDV +P+
Sbjct: 538 FVAMLTSDGNPLTPVRDVIAFPK 560
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 166 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 65
++G P GG+G+G++R L D +I++V L+P
Sbjct: 460 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 166 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 65
++G P GG+G+G++R L D +I++V L+P
Sbjct: 542 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 166 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 65
++G P GG+G+G++R L D +I++V L+P
Sbjct: 518 EYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 31.5 bits (68), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 250 IWDHEELMEGYKREGIDPSPYYWYTDQR 167
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 966 MWQHKELHDGFKRSGLKEADFYSGTARR 993
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 31.5 bits (68), Expect = 0.78
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 250 IWDHEELMEGYKREGIDPSPYYWYTDQR 167
+W H+EL +G+KR G+ + +Y T +R
Sbjct: 1136 MWQHKELHDGFKRSGLKEADFYSGTARR 1163
>Z68882-16|CAE17745.1| 118|Caenorhabditis elegans Hypothetical
protein C47E12.13 protein.
Length = 118
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 416 RHFRDVLSKLVEGSVFLRNVVGAEILYRFY 505
++FR+V++ EGS F R V G E +YRF+
Sbjct: 65 KNFRNVIN---EGSKFFRKVFGHENVYRFH 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,125
Number of Sequences: 27780
Number of extensions: 299546
Number of successful extensions: 837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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