Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b17
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37...    29   4.7  

>06_01_0038 +
           375893-376093,376758-376883,376978-377177,377411-377502,
           377966-378222,378610-378846,378986-379063,380422-380571,
           380646-380720,381109-381205,381289-381341
          Length = 521

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 681 LAYYIYH*SQTKIRKSVILST*DFH*KKFIKYSISRDKV*FRYFQKAHG*PLWPEW 848
           L YY++    TK + S + S  DF+  + I     + K+ F +    HG  +W +W
Sbjct: 436 LPYYVWQCGYTK-KLSKVYSLMDFNFSEPIHSCFGKTKIEFSHDGTCHGFAVWIDW 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,828,801
Number of Sequences: 37544
Number of extensions: 335372
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)