Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b17
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    29   5.6  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical...    28   9.8  
AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical...    28   9.8  
AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical...    28   9.8  

>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 833 GSPVSFLEISKLNFIP--ANRVFYKLFLMK 750
           GSP +F E   +NF+P  A R FY+ F+ K
Sbjct: 331 GSPSAFCEQKVINFLPRAALRAFYRNFISK 360


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 463 LRGIRYTYL*FPYKKYLS*STAVSG 537
           LRG+ +T L  PYK YL+  T +SG
Sbjct: 67  LRGLNFTVLLNPYKNYLNDLTNLSG 91


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 463 LRGIRYTYL*FPYKKYLS*STAVSG 537
           LRG+ +T L  PYK YL+  T +SG
Sbjct: 67  LRGLNFTVLLNPYKNYLNDLTNLSG 91


>U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC317.1 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 392 YDSLIFFLCLVVQ*LNALTLTLIS*GASATHICSFHTKN 508
           Y+  I   C  VQ +  +T+TL   G +   +CS  TKN
Sbjct: 222 YNETIAIFCETVQRVTQVTMTLRQLGYNFKPVCSMITKN 260


>AF098992-15|AAN39673.1|  340|Caenorhabditis elegans Hypothetical
           protein F53C3.13c protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 429 CTTKHRKKINESYKSLFVIDN*LNFINLWFLKIY 328
           CTT   KKI+E+  S +   +  +F   WF  +Y
Sbjct: 166 CTTTDTKKIHEAQLSFYSGHSAFSFYAAWFTSLY 199


>AF098992-14|AAD34669.1|  346|Caenorhabditis elegans Hypothetical
           protein F53C3.13a protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 429 CTTKHRKKINESYKSLFVIDN*LNFINLWFLKIY 328
           CTT   KKI+E+  S +   +  +F   WF  +Y
Sbjct: 166 CTTTDTKKIHEAQLSFYSGHSAFSFYAAWFTSLY 199


>AF098992-13|AAN39672.1|  385|Caenorhabditis elegans Hypothetical
           protein F53C3.13b protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 429 CTTKHRKKINESYKSLFVIDN*LNFINLWFLKIY 328
           CTT   KKI+E+  S +   +  +F   WF  +Y
Sbjct: 166 CTTTDTKKIHEAQLSFYSGHSAFSFYAAWFTSLY 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,979,773
Number of Sequences: 27780
Number of extensions: 361837
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)