Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b17
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.3  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 694  YTIRAKPKSGNQLFYQLEIFIKKSL*NTLLAGIKFSLDISKKL---TGDP 834
            YTI  KP+ G+    Q+   ++K     LL G ++ + ++      TGDP
Sbjct: 1399 YTIHYKPEFGDWDTAQISSTVQKYTLENLLCGSRYQIYVTAYNGIGTGDP 1448


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 207 ECLSCL-SITNLYCVLSMDFFRAITR 133
           + LSC  SI NL C++S+D F AIT+
Sbjct: 121 DVLSCTASILNL-CMISVDRFCAITK 145


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 498 IQKIFILKYRSFRALKKSLD 557
           ++K+ +LK+R FR+  K+ D
Sbjct: 651 MEKLMMLKHREFRSSIKASD 670


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 806 SKLNFIPANRVFYKLF 759
           S   F+P N+ FY+ F
Sbjct: 70  SGYGFVPPNQAFYRFF 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,491
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)