Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b13
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 237 1e-63
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 141 1e-34
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 133 2e-32
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 111 1e-25
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 101 1e-22
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 95 9e-21
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 92 9e-20
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 36 0.008
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 32 0.099
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.53
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 29 0.70
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 3.7
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 26 4.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.9
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 26 4.9
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 6.5
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.5
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 8.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 8.6
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 237 bits (580), Expect = 1e-63
Identities = 130/221 (58%), Positives = 157/221 (71%), Gaps = 13/221 (5%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
L AV AG TSVGIKA++GVV+ATE K S L S+ KV IT IGMVYSGMGPD+R+
Sbjct: 25 LNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRV 84
Query: 474 LVTQARKMAQQ-YFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 298
LV ++RK+AQ Y +Y+E PT LVQ +A+VMQE TQSGGVRPFGVSLL+ G +E P
Sbjct: 85 LVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGP 144
Query: 297 YLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMT 118
L+Q DPSG YFAWKATA+GK+ KTFLEKRY ++LELDDAVHTAIL LKE FEG++T
Sbjct: 145 SLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEGELT 204
Query: 117 ADNIEV----------GICDASG--FRRLEPAHVKDYLANI 31
DNIE+ GI G F RL + ++DYL +
Sbjct: 205 EDNIEIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDYLDQV 245
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = -2
Query: 724 SERYSFSLTTFSPSGKLVQIEYAFS 650
+++Y+FSLTTFSP+GKLVQIEYA +
Sbjct: 2 TDKYAFSLTTFSPNGKLVQIEYALN 26
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 141 bits (341), Expect = 1e-34
Identities = 72/189 (38%), Positives = 113/189 (59%), Gaps = 2/189 (1%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
AV G T++ ++ + +VI E K+ L + + K+ M+ H+ + ++G+ D R+L+
Sbjct: 26 AVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILI 85
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEG--RPY 295
+AR AQ + L +P+ L + VA V Q+YTQSGGVRPFGVS LI G++ G P
Sbjct: 86 DKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPR 145
Query: 294 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 115
++Q +P+G Y AWKATA+G+ + +LEK + E L D+ +H A+ +L E Q +
Sbjct: 146 VYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVV--QTAS 203
Query: 114 DNIEVGICD 88
NIE+ I D
Sbjct: 204 GNIELAIMD 212
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEY 659
Y +L+ FSP G+L+Q+EY
Sbjct: 4 YDRALSVFSPDGRLLQVEY 22
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 133 bits (322), Expect = 2e-32
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 3/213 (1%)
Frame = -3
Query: 732 SWRRRDTVFLSQHLAPRAN*CKSNMLLAAVAAGGTSVGIKASNGVVIATENKHKS-ILYD 556
S+ R T+F +P + L A+ G ++GI A +G+V+A E K S +L
Sbjct: 4 SYDSRTTIF-----SPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQ 58
Query: 555 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVM 376
E S K+ I ++ +G+ D +L+ AR++ QQY ++E +P QLV+RV +
Sbjct: 59 EESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLK 118
Query: 375 QEYTQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKR 199
Q YTQ GG+RPFGVS L GW+ R Y LFQ +PSG Y +W+A ++G N + ++ + +
Sbjct: 119 QGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQE 178
Query: 198 YTEDLELDDAVHTAILTLKEGFE-GQMTADNIE 103
Y +D+ LD+A A+ L + + +T + IE
Sbjct: 179 YKDDINLDEASAMAVKFLSKTLDSNSLTHEKIE 211
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 724 SERYSFSLTTFSPSGKLVQIEYA 656
S Y T FSP G+L Q+EYA
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYA 24
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 111 bits (267), Expect = 1e-25
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
+ A+ G T++G+K + VV+ E + S L + HSV K+ I HIG SG+ D R
Sbjct: 28 IEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADART 87
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGG------VRPFGVSLLICGW 313
++ AR Q + Y EP Q + + + + RPFGV+LLI G
Sbjct: 88 IIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGI 147
Query: 312 EEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGF 133
+E P L+ +PSG YF ++A A+G K+ L K + +D+ L++A + L++
Sbjct: 148 DEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVM 207
Query: 132 EGQMTADNIEVGICDASG 79
E ++ + N+++ A G
Sbjct: 208 EEKLDSKNVQLAKVTAEG 225
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 736 VIMASERYSFSLTTFSPSGKLVQIEYA 656
+ M Y + TFSP G+L Q+EYA
Sbjct: 1 MFMTRSEYDRGVNTFSPEGRLFQVEYA 27
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 101 bits (241), Expect = 1e-22
Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 5/208 (2%)
Frame = -3
Query: 639 AGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQA 460
AG TSVG+ N + ++ K L D +V V IT IG V +G D R V++A
Sbjct: 33 AGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRA 92
Query: 459 RKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSL-LICGWEEGRPYLFQC 283
R A ++ P+P L +R+A + Q TQ +RP GV++ L+ +E P LF+
Sbjct: 93 RSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKL 152
Query: 282 DPSGAYFAWKATAMGKNFNNGKTFLEKRYTED---LELDDAVHTAILTLKEGFEGQMTAD 112
DP+G Y +KAT+ G +LEKR+ +D L D V T I L +
Sbjct: 153 DPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKST 212
Query: 111 NIEVGIC-DASGFRRLEPAHVKDYLANI 31
+++G+ D FR L ++ +L +I
Sbjct: 213 ELQIGVVEDDKPFRVLSVEEIEAHLQSI 240
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 706 SLTTFSPSGKLVQIEYAF 653
++T FSP G+L Q+EYAF
Sbjct: 10 TITVFSPEGRLYQVEYAF 27
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 95.1 bits (226), Expect = 9e-21
Identities = 52/164 (31%), Positives = 81/164 (49%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
AV T +GIK +GV++A E S L N++ + HIG+ +G PD + +V
Sbjct: 29 AVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIV 88
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPYLF 289
+AR A + Y PIP + R+ +Q +T VRPFGV + ++ P+L+
Sbjct: 89 KRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLY 148
Query: 288 QCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTA 157
+P+G Y+ + A GK + LEK L++ DAV A
Sbjct: 149 MVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEA 192
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 91.9 bits (218), Expect = 9e-20
Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
L A+ G +VG+ + V+ ++ L K+ I HIG+ +G+ PD R+
Sbjct: 26 LEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQK--KLIRIDDHIGIAIAGLAPDARV 83
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPY 295
L ++ A ++ PIP +L+ +VA Q TQ G RP+GV L+ G++E P+
Sbjct: 84 LSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPH 143
Query: 294 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT--EDLELDDAVHTAILTLKEGF--EG 127
L + PSG + T+MG + +T++E+ D ++ + +A+ L++ +
Sbjct: 144 LLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQ 203
Query: 126 QMTADNIEVGI 94
++T +N+ + +
Sbjct: 204 ELTEENVSISV 214
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 730 MASERYSFSLTTFSPSGKLVQIEYA 656
M +Y TT+SP G+L Q+EYA
Sbjct: 1 MFRNQYDGDATTWSPQGRLHQVEYA 25
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 35.5 bits (78), Expect = 0.008
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 2/189 (1%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
A + G T VG+ A + +V+ + + + I+ D++ K+ +I+ +I +G D
Sbjct: 31 ATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNC-KKLHLISPNIWCAGAGTAADTEF 89
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPY 295
+ + + + L Y P ++V + + Q + G G L++ G++ P+
Sbjct: 90 VTSMISSNIELHSL-YTNRKP--RVVTALTMLKQHLFRYQG--HIGAYLVLGGYDCKGPH 144
Query: 294 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 115
LF G+ A+G + LE +Y DLE H A+ +KE E +
Sbjct: 145 LFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLER----HEAMELVKEAIEAGIFN 200
Query: 114 DNIEVGICD 88
D CD
Sbjct: 201 DLGSGSNCD 209
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 31.9 bits (69), Expect = 0.099
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 561 YDEHSVNKVEMITG----HIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQ 394
Y +H+VNK+++IT V D+ L T RK+ Y+ +Y P +L++
Sbjct: 1589 YSQHTVNKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALYDVPTTDVELLK 1648
Query: 393 R 391
R
Sbjct: 1649 R 1649
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.53
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 509 MPMWPVIISTLLTLCSSYSM 568
+P+WP+++S LL + SY M
Sbjct: 1508 LPLWPIVVSELLIIFKSYCM 1527
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 65 SKRRNPLASQMPTSMLSAVI*PSKPSLRVKIAV*TASSNSKSSVY 199
S N L S + TS +S V PSK ++KI+ T S S S+Y
Sbjct: 272 SNVNNQLLSHLVTSSISIVSKPSKKGSKLKISNITLRSGSVVSLY 316
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 521 PVIISTLLTLCSSYSMLLCLFSVAITTPFDALMPTEVPPAA 643
P +++T CSS L L + P A +P + PP A
Sbjct: 265 PTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLA 305
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 596 TTPFDALMPTEVPPAATAAKSIFDLH*FARG---AKCCERKTV 715
+ PF+ L+P P A K +H F R A+ C KT+
Sbjct: 236 SVPFNLLVPIPGTPVGDAVKERLPIHPFLRSIATARICMPKTI 278
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 4.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = +2
Query: 515 MWPVIISTLLTLCSSYSMLLCLFSVAITTP 604
+W +++ L + ++S ++C+F V + P
Sbjct: 2245 LWALLLGVLAWISRTHSWIICVFGVGLGAP 2274
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -3
Query: 300 PYLFQCDPSGAYFAWKATAMG---KNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFE 130
P++ QCD + W T MG N N T Y + D+A TA+ + F+
Sbjct: 227 PFITQCDTATGDNYWAGTYMGDFVSNITNVLTNSTGHYCTTQQEDNASLTAL--TRASFD 284
Query: 129 GQMTADNIEV 100
G + + + +
Sbjct: 285 GLVNINRVVI 294
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 518 WPVIISTLLTLCSSYSMLLCLFSVAITTP 604
WP+ I + T+ S+ +LC++ ++ P
Sbjct: 33 WPIRIRIINTIIISFMTMLCMYGSSVFMP 61
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 585 ENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 454
EN+ + + + N +E +T HI Y G G + T +RK
Sbjct: 21 ENRKEEVSTLQDMANDLEKLTDHIEATYIGRGVPHDHAKTGSRK 64
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.6
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = -3
Query: 621 GIKASNGVVIATENKHKSILYDEH----SVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 454
G+K + + I+ + H +++D H ++N+ E+ IG G+GP Y T+A +
Sbjct: 103 GLKCRDRIFIS-DRAH--LVFDYHQRADALNEAELGKQSIGTTGKGIGPAYS---TKATR 156
Query: 453 MAQQYFLMYHEPIPTAQLVQRVATVMQEY 367
+ +YH A+ + VA + + Y
Sbjct: 157 SGIRVHHLYHWAEFEARYRKNVADLQKRY 185
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 213 KFFHY*SSFPWLWLSMQNRLRRGHTGTGKDVLLPSHRSIEI 335
K F Y + W++ NR+ R +G + +L PS I I
Sbjct: 4 KSFKYPKKHKFEWINETNRVERVGSGLKRVILCPSMELIAI 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,602
Number of Sequences: 5004
Number of extensions: 70573
Number of successful extensions: 186
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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