Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b13
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 272 1e-73
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 272 2e-73
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 145 3e-35
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 144 5e-35
06_01_0479 + 3419657-3420337 135 4e-32
06_01_0539 + 3869156-3869908 134 7e-32
06_01_0529 + 3831100-3831852 134 7e-32
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 115 3e-26
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 102 3e-22
07_03_1256 - 25237465-25237590,25237833-25237918,25238025-252380... 93 2e-19
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 89 3e-18
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 87 1e-17
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 75 6e-14
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 33 0.18
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 33 0.18
04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497 32 0.55
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 30 2.2
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 30 2.2
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 29 3.9
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 29 5.1
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 28 6.8
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738... 28 6.8
01_06_1309 - 36170947-36171077,36171227-36172198,36172285-361724... 28 6.8
01_04_0140 + 16572497-16572528,16572958-16573063,16573509-165735... 28 9.0
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 272 bits (668), Expect = 1e-73
Identities = 126/195 (64%), Positives = 160/195 (82%), Gaps = 1/195 (0%)
Frame = -3
Query: 612 ASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFL 433
A+NGVVIATE K SIL DE SV K++ +T +IG+VYSGMGPD+R+LV ++RK AQQY+
Sbjct: 100 AANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYR 159
Query: 432 MYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWK 253
+Y E IP QLV+ A VMQE+TQSGGVRPFGVSLLI G+++ P L+Q DPSG+YF+WK
Sbjct: 160 LYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWK 219
Query: 252 ATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDAS-GF 76
A+AMGKN +N KTFLEKRYTED+ELDDA+HTAILTLKEG+EGQ++A+NIE+GI + F
Sbjct: 220 ASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREF 279
Query: 75 RRLEPAHVKDYLANI 31
+ L PA +KD+L +
Sbjct: 280 KVLSPAEIKDFLEEV 294
Score = 26.2 bits (55), Expect(2) = 1.3
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -2
Query: 691 SPSGKLVQIEYAFS 650
SPSGKLVQIE+A +
Sbjct: 44 SPSGKLVQIEHALT 57
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 730 MASERYSFSLTTF 692
M +YSFSLTTF
Sbjct: 1 MGDSQYSFSLTTF 13
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 272 bits (667), Expect = 2e-73
Identities = 126/198 (63%), Positives = 161/198 (81%), Gaps = 1/198 (0%)
Frame = -3
Query: 621 GIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQ 442
G A+NGVVIATE K SIL DE SV K++ +T +IG+VYSGMGPD+R+LV ++RK AQQ
Sbjct: 60 GRGAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQ 119
Query: 441 YFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYF 262
Y+ +Y E IP QLV+ A VMQE+TQSGGVRPFGVSLLI G+++ P L+Q DPSG+YF
Sbjct: 120 YYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYF 179
Query: 261 AWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDAS 82
+WKA+AMGKN +N KTFLEKRYTED+ELDDA+HTAILTLKEG+EGQ++A+NIE+G+ +
Sbjct: 180 SWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSD 239
Query: 81 -GFRRLEPAHVKDYLANI 31
F+ L PA +KD+L +
Sbjct: 240 REFKVLTPAEIKDFLEEV 257
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2
Query: 730 MASERYSFSLTTFSPSGKLVQIEYAFS 650
M +YSFSLTTFSPSGKLVQIE+A +
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALT 27
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 145 bits (352), Expect = 3e-35
Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
L AV G +VG++ ++ VV+ E K L D S+ K+ + HI + +G+ D R+
Sbjct: 94 LEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARV 153
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWE--EGR 301
L+ +AR Q + L +P+ + + +A + Q+YTQSGGVRPFG+S LI G++ +
Sbjct: 154 LINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEK 213
Query: 300 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQM 121
P L+Q DPSG + AWKA A G+N N+ + FLEK Y +D + + AI L E E
Sbjct: 214 PALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KDTSGKETIKLAIRALLEVVES-- 270
Query: 120 TADNIEVGI-CDASGFRRLEPAHVKDYLANI 31
NIE+ + G R LE A + +Y+A I
Sbjct: 271 GGKNIEIAVMTHKDGLRELEEAEIDEYVAEI 301
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 718 RYSFSLTTFSPSGKLVQIEYA 656
RY ++T FSP G L Q+EYA
Sbjct: 73 RYDRAITVFSPDGHLFQVEYA 93
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 144 bits (350), Expect = 5e-35
Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 3/211 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
L AV G +VG++ S+ VV+ E K L D SV K+ + HI + +G+ D R+
Sbjct: 24 LEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARV 83
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWE--EGR 301
L+ +AR Q + L + + + + +A + Q+YTQSGGVRPFG+S LI G++ +
Sbjct: 84 LINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDK 143
Query: 300 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQM 121
P L+Q DPSG + AWKA A G+N N+ + FLEK Y E + + AI L E E
Sbjct: 144 PALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE-TSGKETIKLAIRALLEVVES-- 200
Query: 120 TADNIEVGI-CDASGFRRLEPAHVKDYLANI 31
NIE+ + G R+LE A + +Y+A I
Sbjct: 201 GGKNIEIAVMTQKDGLRQLEEAEIDEYVAEI 231
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 718 RYSFSLTTFSPSGKLVQIEYA 656
RY ++T FSP G L Q+EYA
Sbjct: 3 RYDRAITVFSPDGHLFQVEYA 23
>06_01_0479 + 3419657-3420337
Length = 226
Score = 135 bits (326), Expect = 4e-32
Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
+ A+ G+++G+ A++GVV+ E K S +L S K+ I H+ +G+ D
Sbjct: 1 MEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDAN 60
Query: 477 LLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 298
+L+ AR AQ+Y L Y EPIP QLVQ + Q YTQ GG+RPFGVS L GW++
Sbjct: 61 ILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHG 120
Query: 297 Y-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEG-Q 124
+ L+ DPSG Y WKA A+G N ++ L++ Y + L ++AV A+ L + +
Sbjct: 121 FQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTS 180
Query: 123 MTADNIEV 100
+TA+ +E+
Sbjct: 181 LTAEKLEL 188
>06_01_0539 + 3869156-3869908
Length = 250
Score = 134 bits (324), Expect = 7e-32
Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
+ A+ G+++G+ A++GVV+ E K S +L S K+ I H+ +G+ D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDAN 84
Query: 477 LLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 298
+L+ AR AQ+Y L Y EPIP QLVQ + Q YTQ GG+RPFGVS L GW++
Sbjct: 85 ILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHG 144
Query: 297 Y-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEG-Q 124
+ L+ DPSG Y WKA A+G N ++ L++ Y + + ++AV A+ L + +
Sbjct: 145 FQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTS 204
Query: 123 MTADNIEV 100
+TA+ +E+
Sbjct: 205 LTAEKLEL 212
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 724 SERYSFSLTTFSPSGKLVQIEYA 656
S RY T FSP G+L Q+EYA
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYA 24
>06_01_0529 + 3831100-3831852
Length = 250
Score = 134 bits (324), Expect = 7e-32
Identities = 69/188 (36%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
+ A+ G+++G+ A++GVV+ E K S +L S K+ I H+ +G+ D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDAN 84
Query: 477 LLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 298
+L+ AR AQ+Y L Y EPIP QLVQ + Q YTQ GG+RPFGVS L GW++
Sbjct: 85 ILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHG 144
Query: 297 Y-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEG-Q 124
+ L+ DPSG Y WKA A+G N ++ L++ Y + + ++AV A+ L + +
Sbjct: 145 FQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTS 204
Query: 123 MTADNIEV 100
+TA+ +E+
Sbjct: 205 LTAEKLEL 212
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 724 SERYSFSLTTFSPSGKLVQIEYA 656
S RY T FSP G+L Q+EYA
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYA 24
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 115 bits (277), Expect = 3e-26
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 5/215 (2%)
Frame = -3
Query: 651 AAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLL 472
A +AG TS+G++ + V + T+ K L D SV + IT +IG++ +G+ D R L
Sbjct: 31 AVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSL 90
Query: 471 VTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGW-EEGRPY 295
V QAR A ++ + +P L + +A Q YTQ +RP GV ++ G+ EE
Sbjct: 91 VYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQ 150
Query: 294 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED--LELDDAVHTAILTLKEGFEGQM 121
LF+CDP+G +F KAT+ G FLEK+ +D ++ V AI L+ +
Sbjct: 151 LFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDF 210
Query: 120 TADNIEVGIC--DASGFRRLEPAHVKDYLANIPLR 22
A IEVG+ D FR L + +L I R
Sbjct: 211 KATEIEVGVVRKDDRVFRALTTEEIDQHLTAISER 245
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEYAF 653
Y +T FSP G+L Q+EYAF
Sbjct: 9 YDRHITIFSPEGRLYQVEYAF 29
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 102 bits (244), Expect = 3e-22
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
+ A+ G T++G+K +GVV+A E + S L + SV K+ I HIG SG+ D R
Sbjct: 41 IEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADART 100
Query: 474 LVTQARKMAQQYFLMYHEPI---PTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEG 304
LV AR Q + Y EP+ T Q + +A E + RPFGVSLLI G +E
Sbjct: 101 LVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDEN 160
Query: 303 RPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDL 184
P L+ DPSG ++ A A+G + L+++Y + L
Sbjct: 161 GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKSL 200
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEYA 656
Y + TFSP G+L Q+EYA
Sbjct: 21 YDRGVNTFSPEGRLFQVEYA 40
>07_03_1256 -
25237465-25237590,25237833-25237918,25238025-25238083,
25238516-25238612,25239582-25239663,25239752-25240096
Length = 264
Score = 93.1 bits (221), Expect = 2e-19
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Frame = -3
Query: 651 AAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLL 472
A AG TSVG++ + V + T K L+D ++ + IT IG++ +GM D R +
Sbjct: 90 AVKLAGITSVGVRGDDSVYVLTHRKEDK-LHDPTTITNLFAITDRIGLLATGMPGDGRAI 148
Query: 471 VTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEE--GRP 298
+AR A ++ + + L Q +A Q TQ +RP+GV +I G +E G P
Sbjct: 149 AQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQHAQIRPYGVVSMIFGIDEEKGTP 208
Query: 297 YLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKR 199
LF CDP+G +FA KAT+ G FLE+R
Sbjct: 209 ELFTCDPAGQFFAHKATSAGPKEKEVMNFLEER 241
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/145 (31%), Positives = 77/145 (53%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
AV GT VGIK +G+V+ E S + + S ++ + H G+ +G+ D R +V
Sbjct: 30 AVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSNRRLHSVHRHSGLAVAGLAADGRQIV 89
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPYLF 289
++A+ A Y +Y EP+P +L RVA+ + T +RPFG +++ G++ P L+
Sbjct: 90 SRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLY 149
Query: 288 QCDPSGAYFAWKATAMGKNFNNGKT 214
+PSG + + A+GK KT
Sbjct: 150 MIEPSGLSYKYFGAALGKGRQAAKT 174
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEYA 656
Y S+TTFSP G++ Q+EYA
Sbjct: 8 YDLSVTTFSPDGRVFQVEYA 27
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 10/199 (5%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIG--------MVYSGM 493
AV GT VGIK +G+V+ E S + E S ++ + H G M +G+
Sbjct: 30 AVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLDIILINVMAVAGL 89
Query: 492 GPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGW 313
D R +V++A+ A Y +Y EPI +L RVA+ + T +RPFG +++ G+
Sbjct: 90 AADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGY 149
Query: 312 EEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLEL-DDAVHTAILTLKEG 136
+ P L+ +PSG + + A+GK KT +EK +L + V A +
Sbjct: 150 DRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVH 209
Query: 135 FEGQMTADNIEVG-ICDAS 82
E + A +E+ ICD S
Sbjct: 210 DEAKDKAFELELSWICDES 228
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEYA 656
Y S+TTFSP G++ Q+EYA
Sbjct: 8 YDLSVTTFSPDGRVFQVEYA 27
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 74.9 bits (176), Expect = 6e-14
Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 30/233 (12%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
+ AV G VG+++ V+A NK S L H KV + H G+ +G+ D R+
Sbjct: 1 MEAVKQGSACVGLRSRTHAVLAAANKAASEL-SSHQ-RKVFRVADHAGVALAGLTADGRV 58
Query: 474 LVTQARKMAQQYFLMYHEPI-------------------------PTAQL-VQRVAT-VM 376
L R + +Y P+ PT L + V+ V+
Sbjct: 59 LSRFLRSECINHAFVYDAPLPVSRLALRLADKAQPDMYIFGITICPTTFLWIMSVSLMVL 118
Query: 375 QEYTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRY 196
Q TQ RP+GV LL+ G +E +L+ PSG YF ++A A+G KTFLE+R+
Sbjct: 119 QVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRF 178
Query: 195 T--EDLELDDAVHTAILTLKEGFEGQ-MTADNIEVGICDASGFRRLEPAHVKD 46
D + + A+ +KE +G+ +T+ N V I +EP + D
Sbjct: 179 EGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMID 231
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = -3
Query: 636 GGTSVGIKASNGVVIATENKHKSILY-DEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQA 460
G T VG+ GVV+A +++ + +Y + +K+ +T ++ + SG D +++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYV 84
Query: 459 RKMAQQYFLMYHEPIP---TAQLVQRVATVMQEYTQSG 355
R Q+ + +P A L++ +A + Q+G
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAG 122
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = -3
Query: 636 GGTSVGIKASNGVVIATENKHKSILY-DEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQA 460
G T VG+ GVV+A +++ + +Y + +K+ +T ++ + SG D +++
Sbjct: 25 GTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYV 84
Query: 459 RKMAQQYFLMYHEPIP---TAQLVQRVATVMQEYTQSG 355
R Q+ + +P A L++ +A + Q+G
Sbjct: 85 RYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAG 122
>04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497
Length = 398
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 384 TVMQEYTQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKN 232
T QEYT +G R LI E PY +F C + A A+KA+ +GK+
Sbjct: 296 TPAQEYTVTGARRMAETGQLIACHPESYPYAVFMCHLTEATRAYKASLVGKD 347
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 384 TVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQC--DPSGAYFAWKATAMGK 235
TV+ + + G+ L+ GW +G Y+ QC P G+Y ++ T G+
Sbjct: 73 TVVNHSPYNMSIHWHGIRQLLSGWADGPSYITQCPIQPGGSY-VYRFTITGQ 123
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 384 TVMQEYTQSGGVRPFGVSLLICGWEEGRPYLFQC--DPSGAYFAWKATAMGK 235
TV+ + + G+ L+ GW +G Y+ QC P G+Y ++ T G+
Sbjct: 73 TVVNHSPYNMSIHWHGIRQLLSGWADGPSYITQCPIQPGGSY-VYRFTITGQ 123
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 591 QSRRHLTL*CRRKYHRRLRQLKAYSICTNLP 683
+S+ HLT R YH R+ L+A+ C +LP
Sbjct: 752 RSKTHLTSALSRFYHLRILDLEAWDGCLDLP 782
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 305 PSSQPQINRDTPKGRTPPDCVYSCMTVATRCTNCAV 412
PSS P++ P GR P C S +++T C AV
Sbjct: 6 PSSFPRVIALLPDGRRPSPCRSSSSSLSTACDRGAV 41
>12_01_0445 -
3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 207 EKRYTEDL--ELDDAVHTAILTLKEGFEGQMTADNIEV 100
EK E+L EL+ + TA+ +KE E Q+ A N EV
Sbjct: 688 EKMRQEELVAELEMKMETAVEAIKESLEAQLCAANTEV 725
>01_07_0294 +
42571700-42573373,42573653-42573720,42573785-42573819,
42573988-42574061,42574491-42574726,42574958-42575044,
42575356-42575455,42575584-42576003
Length = 897
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 248 QPWERTLIMEKLSLKKDIQKTWS 180
QPWE+ L+M L K +Q+ W+
Sbjct: 440 QPWEKLLLMSGKPLSKCMQEAWA 462
>01_06_1309 -
36170947-36171077,36171227-36172198,36172285-36172413,
36172535-36172779,36172904-36173055,36173202-36173306
Length = 577
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 339 GVSLLICGWEEGRPYLFQC--DPSGAYFAWKATAMGK 235
G+ L GW +G Y+ QC P G+Y +K T G+
Sbjct: 88 GIRQLRSGWADGPAYITQCPIQPGGSY-VYKYTITGQ 123
>01_04_0140 +
16572497-16572528,16572958-16573063,16573509-16573567,
16573615-16573681,16573964-16573989,16574787-16574913,
16576542-16576609,16577223-16577329,16577837-16577902,
16579332-16579438
Length = 254
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 457 PCLSHQ*TIVWTHSRVNHANV 519
PCL Q + W+H+ ++HANV
Sbjct: 103 PCLVSQESRSWSHANMHHANV 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,656,302
Number of Sequences: 37544
Number of extensions: 521625
Number of successful extensions: 1370
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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