Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b13
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein p...   396   e-112
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   2.5  
AY341160-1|AAR13724.1|  159|Anopheles gambiae CED6 protein.            24   4.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   9.9  

>AJ416109-1|CAC94781.1|  234|Anopheles gambiae PROSAg25 protein
           protein.
          Length = 234

 Score =  396 bits (975), Expect = e-112
 Identities = 183/209 (87%), Positives = 197/209 (94%)
 Frame = -3

Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
           LAAVAAG  SVGIKA NGVVIATENK KSILYDEHSV+KVEM+T HIGM+YSGMGPDYRL
Sbjct: 26  LAAVAAGAPSVGIKAVNGVVIATENKQKSILYDEHSVHKVEMVTNHIGMIYSGMGPDYRL 85

Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPY 295
           LV QARK+AQ Y+L Y EPIPT+QLVQ+VATVMQEYTQSGGVRPFGVSLLICGW++GRPY
Sbjct: 86  LVKQARKLAQNYYLTYREPIPTSQLVQKVATVMQEYTQSGGVRPFGVSLLICGWDDGRPY 145

Query: 294 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 115
           LFQCDPSGAYFAWKATAMGKN NNGKTFLEKRY+EDLELDDAVHTAILTLKEGFEGQM A
Sbjct: 146 LFQCDPSGAYFAWKATAMGKNANNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGQMNA 205

Query: 114 DNIEVGICDASGFRRLEPAHVKDYLANIP 28
           DNIEVGICDA+GFRRL+P+ V+DYLANIP
Sbjct: 206 DNIEVGICDANGFRRLDPSDVQDYLANIP 234



 Score = 54.0 bits (124), Expect = 5e-09
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = -2

Query: 730 MASERYSFSLTTFSPSGKLVQIEYAFS 650
           MASERYSFSLTTFSPSGKLVQIEYA +
Sbjct: 1   MASERYSFSLTTFSPSGKLVQIEYALA 27


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 330 LLICGWEEGRPYLFQCDPSGAYFAW 256
           +++  W E    L  CD SG  F W
Sbjct: 67  VILVKWNEPYQKLASCDSSGIIFVW 91


>AY341160-1|AAR13724.1|  159|Anopheles gambiae CED6 protein.
          Length = 159

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 45  NPSRGLALSDGTRSRHRC 98
           N S  L  S+GT  RH C
Sbjct: 108 NSSNNLTTSNGTEDRHEC 125


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +2

Query: 275 EGSH-WNR*GRPSSQPQINRDTPKGRTP 355
           EGS  WN   RP  Q  + R  PK   P
Sbjct: 540 EGSQEWNSRSRPPQQHSMLRTGPKSLAP 567


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 846,424
Number of Sequences: 2352
Number of extensions: 17030
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)