Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b13
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 263 8e-71
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 129 2e-30
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 126 2e-29
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 109 2e-24
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 83 2e-16
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 80 2e-15
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 77 1e-14
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical ... 29 4.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 28 6.0
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 263 bits (645), Expect = 8e-71
Identities = 128/210 (60%), Positives = 160/210 (76%), Gaps = 2/210 (0%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
L AV G SVG++A +GVV+ATEN S+L D+ KVE I+ HIG VYSGMGPD+R+
Sbjct: 25 LNAVKNGQPSVGLRAKDGVVLATENVG-SVLTDDQP--KVEQISKHIGCVYSGMGPDFRI 81
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEE--GR 301
LV +ARK+A +Y +MY E +PT QLV +A VMQEYTQSGGVRPFG SLLI GW++ GR
Sbjct: 82 LVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGR 141
Query: 300 PYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQM 121
P LFQCDPSGAYFAWKATA+GKN N KTFLEKR++E LELDD +HTA+LTL+E F+ M
Sbjct: 142 PLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFDVGM 201
Query: 120 TADNIEVGICDASGFRRLEPAHVKDYLANI 31
+N+EV +C+++GF RL V D+L +
Sbjct: 202 NENNVEVAVCNSTGFHRLTKQQVHDHLGTL 231
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -2
Query: 721 ERYSFSLTTFSPSGKLVQIEYAFS 650
+ Y FSLTTFSPSGKL+QIEYA +
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALN 26
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 129 bits (311), Expect = 2e-30
Identities = 63/186 (33%), Positives = 108/186 (58%), Gaps = 1/186 (0%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
AV G T+VG++ + +VI E K L D+ ++ K+ MI H+ + ++G+ D R+LV
Sbjct: 26 AVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLV 85
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWE-EGRPYL 292
+AR Q Y L +P+ A + + +A Q +TQS G RPFG+S+LI G++ +G P L
Sbjct: 86 DRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRL 145
Query: 291 FQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTAD 112
F+ +PSGAY+ + A A G+ + +LE++Y+E+ +D+A ++ +
Sbjct: 146 FKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPGSQ 205
Query: 111 NIEVGI 94
NIE+ +
Sbjct: 206 NIEIAV 211
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 718 RYSFSLTTFSPSGKLVQIEYA 656
RY ++T FSP G L Q+EYA
Sbjct: 3 RYDRAITIFSPDGHLFQVEYA 23
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 126 bits (304), Expect = 2e-29
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKH-KSILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
+ A++ GT +GI +S G+V+A E K+ +L D KV ++ +I +G+ D
Sbjct: 25 MEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADAN 84
Query: 477 LLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRP 298
+L+ R A Y Y E +P QLVQ + Q YTQ GG RPFGVSLL GW++
Sbjct: 85 ILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYG 144
Query: 297 Y-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQM 121
Y L+Q DPSG Y WKAT +G N T L++ Y + L++A AI L + + ++
Sbjct: 145 YQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEY-KSPNLEEAKQLAIKVLWKTLDVKL 203
Query: 120 TADNIEVGI 94
++ +E+ +
Sbjct: 204 ASEKVEMAV 212
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 724 SERYSFSLTTFSPSGKLVQIEYAFSCRS 641
+ RY T FSP G+L Q+EYA S
Sbjct: 2 ARRYDSRTTIFSPEGRLYQVEYAMEAIS 29
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 109 bits (262), Expect = 2e-24
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Frame = -3
Query: 654 LAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 475
+ AV G TS+GIK S GV++A E + S L ++ K+ + HIG+ ++G+ D R
Sbjct: 28 IEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRT 87
Query: 474 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY----TQSGGVRPFGVSLLICGWEE 307
LV +A+ AQ ++ Y+ I + Q VA + ++ ++ RPFGV++L G ++
Sbjct: 88 LVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQ 147
Query: 306 GRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEG 127
LF DPSG + KA ++G + + L+++Y + L + + + A+ LK+ E
Sbjct: 148 EGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEE 207
Query: 126 QMTADNIEV 100
++ + N+EV
Sbjct: 208 KLNSANVEV 216
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 736 VIMASERYSFSLTTFSPSGKLVQIEYA 656
+ + Y + TFSP G+L Q+EYA
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYA 27
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 83.0 bits (196), Expect = 2e-16
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 5/211 (2%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
A+ G +VGIK+ VI + ++ L H KV I H G+ +G+ D R+L
Sbjct: 28 AMKQGSATVGIKSETHAVIVALKRAQNDL-SSHQ-KKVYEIDTHAGVSIAGLLSDGRILA 85
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPYLF 289
+ + Y + +P +L + + +Q TQ G RPFGV +LI G+++ ++
Sbjct: 86 RYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHII 145
Query: 288 QCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT--EDLELDDAVHTAILTLKEGF--EGQM 121
Q DPS + T++G + +T+LE+ E + + A+L L++ E +
Sbjct: 146 QTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENL 205
Query: 120 TADNIEVGICDA-SGFRRLEPAHVKDYLANI 31
A N +GI S F LE A V +L +
Sbjct: 206 NAQNTSIGIVGKDSPFSLLEDAQVAVHLNQV 236
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 79.8 bits (188), Expect = 2e-15
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 1/165 (0%)
Frame = -3
Query: 648 AVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
AV GT + I+ NGVV+ + S LY +++ ++ + ++G+ +G PD L
Sbjct: 30 AVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALK 89
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGW-EEGRPYL 292
A A ++ Y EP+P + VA + +T G RPFG W ++ L
Sbjct: 90 NYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTGGRL 148
Query: 291 FQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTA 157
F +PSG + +KA A+GK+ K +EK E+L+++ V A
Sbjct: 149 FLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEA 193
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 715 YSFSLTTFSPSGKLVQIEYA 656
Y + +TFSP G++ Q+EYA
Sbjct: 8 YDLAASTFSPDGRIFQVEYA 27
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 77.4 bits (182), Expect = 1e-14
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Frame = -3
Query: 630 TSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKM 451
T+V +K ++ VIA + + L +V V I+ +G GM PD + + +A+
Sbjct: 38 TAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGE 97
Query: 450 AQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGR-PYLFQCDPS 274
A + +P L +++A + Q YTQ+ +R G +LL +++ + P +++ DP+
Sbjct: 98 AASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPA 157
Query: 273 GAYFAWKATAMGKNFNNGKTFLEKRYTEDLEL--DDAVHTAILTLKEGFEGQMTADNIEV 100
G Y K ++G +FLEK+ + EL +A+ AI L+ + + ++EV
Sbjct: 158 GYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEV 217
Query: 99 GIC--DASGFRRLEPAHVKDYLANIPLR 22
+ D S F +L V+ +L I R
Sbjct: 218 VVVTKDNSKFTKLTSDQVEHHLNQIANR 245
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 727 ASERYSFSLTTFSPSGKLVQIEYAF 653
+S + +T FSP G++ Q+EYAF
Sbjct: 5 SSAGFDRHITIFSPEGRVYQVEYAF 29
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 44.8 bits (101), Expect = 7e-05
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Frame = -3
Query: 642 AAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLV 469
+ G T V + G+V+ +++ + I+ D+H KV +T I +G D +
Sbjct: 44 STGTTIVAVAFKGGLVMGADSRATAGNIIADKHC-EKVHKLTESIYACGAGTAAD----L 98
Query: 468 TQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPF-GVSLLICGWEEGRPYL 292
Q KM + + T + + + + Q + + G LLI G + P+L
Sbjct: 99 DQVTKMLSGNLRLLE--LNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVDPTGPHL 156
Query: 291 FQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTAD 112
+ C +G A+ TA G T LE+ + D+ D+A L+ G G +
Sbjct: 157 YMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDNASG 216
Query: 111 N 109
N
Sbjct: 217 N 217
>Z92804-5|CAD89722.2| 320|Caenorhabditis elegans Hypothetical
protein K05D4.8 protein.
Length = 320
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 106 YVICSHLTLKTFLKGQDSCVNCVI*LQVFCISFFKES 216
Y++C+H LKTF DS C ++FC F K S
Sbjct: 270 YLVCNHRNLKTFFDSIDSRNVC----KLFCCPFSKGS 302
>Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 582 NKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
N++ +L H +NK M ++ M++ M PDY+
Sbjct: 315 NRYMELLSLCHIINKTNMDLQYVSMMFQFMDPDYK 349
>AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 582 NKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYR 478
N++ +L H +NK M ++ M++ M PDY+
Sbjct: 315 NRYMELLSLCHIINKTNMDLQYVSMMFQFMDPDYK 349
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 417 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 509
S HD +RS+ G + P D+ +P P P
Sbjct: 2 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 32
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 417 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 509
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 417 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 509
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 417 SAHDTSRSTAGPSSLLESPVDDSLDPFPSKP 509
S HD +RS+ G + P D+ +P P P
Sbjct: 110 STHDDTRSSGGGDGTIHIPSADAKEPTPESP 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,975
Number of Sequences: 27780
Number of extensions: 411681
Number of successful extensions: 1218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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