Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b11
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   1.2  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   2.9  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   2.9  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   2.9  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = -3

Query: 418  YIWEFNRRMQSVKNINKVKTTAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQT 239
            ++ + N R+Q+  N +   T+   I  F   LS+PS+         D P P  S +    
Sbjct: 2593 FLLDLNSRLQTESNSSSTATSGWTINLFPTHLSTPSTMPRSQQKRLDVP-PNNSVHQNSY 2651

Query: 238  QKLGLQTPPG 209
             KLG  + PG
Sbjct: 2652 MKLGYSSDPG 2661


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 156 FGGLSMNGSWIFCMCEVYPGGVCNPSF 236
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 202 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 44
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 202 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 44
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 156 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 242
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>AF003141-1|AAK21483.1|  355|Caenorhabditis elegans Hypothetical
           protein W02D3.4 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -2

Query: 770 LQNVXSQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYP 591
           L+N+ S+  K     E   + G + ++L+P + +NSGT+  F   +  +      +   P
Sbjct: 158 LENLNSEEKKALNTTESSDDGGLETEVLRPDKNLNSGTQRFFAFITAIVAGFFYGMTFVP 217

Query: 590 LSRMYYNAANTMFY 549
           + RM  N     FY
Sbjct: 218 VIRMIDNPQLYPFY 231


>Z69794-1|CAA93679.2|  663|Caenorhabditis elegans Hypothetical
           protein R03G8.1 protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 485 ICYCNPQC*TCNWTRHSF 538
           ICYC  Q   C+WTR +F
Sbjct: 641 ICYCKEQPKQCSWTRLNF 658


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 121 STHPTVAKERSDFVACPRLAFDCYKIVSARF 29
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 121 STHPTVAKERSDFVACPRLAFDCYKIVSARF 29
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,536
Number of Sequences: 27780
Number of extensions: 386919
Number of successful extensions: 1211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)