Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b09
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.5  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 446  RIDRLLFETLFREFAQQSVSG 384
            R++ LL +  FREFA+ SVSG
Sbjct: 1600 RVEPLLVKDTFREFAEASVSG 1620


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
 Frame = -1

Query: 754  DVINENNLITQIFVQFFYNL-----ICDKAYSLYTKRDM---CVPFVKECKKATIGLRQE 599
            DVI E   I+  +  FF        +C++    +    +   C+P +      T+GL++ 
Sbjct: 786  DVIQERPKISYDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEACIPSLNPDTLRTLGLKEG 845

Query: 598  DHERVLSILNAQCNGFST 545
            D  RV++ +N + NG ST
Sbjct: 846  DIIRVMNHVN-ELNGVST 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,080
Number of Sequences: 5004
Number of extensions: 66748
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)