Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b03
         (876 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   3.0  
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         25   3.0  
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         25   3.0  
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         25   3.0  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    25   4.0  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    25   4.0  
AF283273-1|AAG15375.1|   62|Anopheles gambiae phenylalanine hydr...    25   4.0  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   9.2  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 134  LPLLLCNTPHQQRPLVDNKRQK*YK 60
            L ++  + P+++  LVD KRQK YK
Sbjct: 1029 LSMMRRDAPYKRLVLVDKKRQKKYK 1053


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 632 VETPEKTSSPVCYCSALVVKTAI*LSRMLTFAQETPCWLTIRPY*PTCAKDLTMKQKK 459
           V+TP      V Y + L +       R  + ++ TPCW + +   P    +LT  +K+
Sbjct: 111 VQTPHAEEGYVAYDTCLPLGILPSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKE 168


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 632 VETPEKTSSPVCYCSALVVKTAI*LSRMLTFAQETPCWLTIRPY*PTCAKDLTMKQKK 459
           V+TP      V Y + L +       R  + ++ TPCW + +   P    +LT  +K+
Sbjct: 111 VQTPHAEEGYVAYDTCLPLGILPSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKE 168


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -2

Query: 632 VETPEKTSSPVCYCSALVVKTAI*LSRMLTFAQETPCWLTIRPY*PTCAKDLTMKQKK 459
           V+TP      V Y + L +       R  + ++ TPCW + +   P    +LT  +K+
Sbjct: 111 VQTPHAEEGYVAYDTCLPLGILPSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKE 168


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 876 PXRRDPNAVRQNFPETNVRTPE 811
           P R DP+ +R+NF     +TP+
Sbjct: 134 PVRFDPSVLRRNFALKTAQTPD 155


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 876 PXRRDPNAVRQNFPETNVRTPE 811
           P R DP+ +R+NF     +TP+
Sbjct: 139 PVRFDPSVLRRNFALKTAQTPD 160


>AF283273-1|AAG15375.1|   62|Anopheles gambiae phenylalanine
           hydroxylase protein.
          Length = 62

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 660 RTGGSYYVQGRNAGENVESCLL 595
           + GGSY ++G +A E    CL+
Sbjct: 4   KEGGSYIMEGHDAAEAKNVCLI 25


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 588 RTCRQDRNLAQSDVNICSRDPLLANDS 508
           ++CR  RNLA+S  +  SRD     +S
Sbjct: 5   KSCRFGRNLAKSIPSFLSRDCTTTTES 31


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,363
Number of Sequences: 2352
Number of extensions: 15970
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93853377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)