Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b03
(876 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF364550-3|AAK52059.1| 518|Drosophila melanogaster envelope pro... 30 4.8
AE013599-2946|AAM68426.1| 137|Drosophila melanogaster CG30129-P... 30 4.8
AY075429-1|AAL68245.1| 1384|Drosophila melanogaster LD47780p pro... 29 8.4
AE014135-123|AAX52511.1| 1384|Drosophila melanogaster CG31992-PH... 29 8.4
AE014135-122|AAX52510.1| 1384|Drosophila melanogaster CG31992-PG... 29 8.4
AE014135-121|AAN06509.1| 1384|Drosophila melanogaster CG31992-PF... 29 8.4
AE014135-120|AAN06508.1| 1384|Drosophila melanogaster CG31992-PE... 29 8.4
AE014135-119|AAN06507.1| 1384|Drosophila melanogaster CG31992-PD... 29 8.4
AE014135-118|AAF59324.2| 1384|Drosophila melanogaster CG31992-PC... 29 8.4
AE014135-117|AAF59322.2| 1384|Drosophila melanogaster CG31992-PB... 29 8.4
AE014135-116|AAF59323.2| 1384|Drosophila melanogaster CG31992-PA... 29 8.4
>AF364550-3|AAK52059.1| 518|Drosophila melanogaster envelope
protein protein.
Length = 518
Score = 29.9 bits (64), Expect = 4.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 258 NKIMPIIMMIGAVLFLGLILYFIYRY 181
N + I + I A++ L LILYFIY+Y
Sbjct: 447 NTLQIITLTILAIIILTLILYFIYKY 472
>AE013599-2946|AAM68426.1| 137|Drosophila melanogaster CG30129-PA
protein.
Length = 137
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 648 SYYVQGRNAGENVESCLLLQRTCRQDRNLAQSDVNICSRDPLLANDS 508
S V G++A E + + +Q+ C ++ N+A SD N+ + D +AN S
Sbjct: 16 SELVAGQSAAE-LAAYKQIQQACIKELNIAASDANLLTTDKEVANPS 61
>AY075429-1|AAL68245.1| 1384|Drosophila melanogaster LD47780p
protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-123|AAX52511.1| 1384|Drosophila melanogaster CG31992-PH,
isoform H protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-122|AAX52510.1| 1384|Drosophila melanogaster CG31992-PG,
isoform G protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-121|AAN06509.1| 1384|Drosophila melanogaster CG31992-PF,
isoform F protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-120|AAN06508.1| 1384|Drosophila melanogaster CG31992-PE,
isoform E protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-119|AAN06507.1| 1384|Drosophila melanogaster CG31992-PD,
isoform D protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-118|AAF59324.2| 1384|Drosophila melanogaster CG31992-PC,
isoform C protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-117|AAF59322.2| 1384|Drosophila melanogaster CG31992-PB,
isoform B protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
>AE014135-116|AAF59323.2| 1384|Drosophila melanogaster CG31992-PA,
isoform A protein.
Length = 1384
Score = 29.1 bits (62), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 858 NAVRQNFPETNVRTPEGXQNALQQNPRLH 772
N ++ NF E N+ P G Q A Q RL+
Sbjct: 845 NNLQSNFSELNINKPSGYQGASNQQSRLN 873
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,881,386
Number of Sequences: 53049
Number of extensions: 735383
Number of successful extensions: 1925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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