Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b03
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U41510-7|AAK39381.2|   76|Caenorhabditis elegans Hypothetical
           protein ZC449.4 protein.
          Length = 76

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 11/37 (29%), Positives = 28/37 (75%)
 Frame = -1

Query: 288 KSSNSSDGIRNKIMPIIMMIGAVLFLGLILYFIYRYM 178
           K+ N +  +RN+++ +++++  +L LG+++YF++R M
Sbjct: 18  KNGNEASSLRNELLALMVLL-CLLILGVVIYFVFRSM 53


>Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical
           protein F08G2.5 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 853 SQTKLPRDQRAHARRXSKRTAAKPPFT*SHENLESS 746
           S++  PR +RA  +R SKR + KPP T S ++ + S
Sbjct: 66  SESPAPRARRARKQR-SKRKSVKPPNTSSDDSSDDS 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,473
Number of Sequences: 27780
Number of extensions: 362931
Number of successful extensions: 1025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)