Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    25   0.88 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   3.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.7  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   8.2  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 92  ITLKKCVINIILTLNCCLRFLYSCIHYIICSLLFSIYNGF 211
           + L KC+ + + +L  C+       ++ I  +LF+++N F
Sbjct: 230 LILAKCITSSLSSLYTCIAGYEFNANFTISYILFALFNTF 269


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  YGTXLTL*FL*CLIQFISEMNKVWYITLKKCVINIILTLNCCLRFLYSCIH 169
           Y + L L F+ C   ++  +  ++Y   +  +IN   TL   + F  +CI+
Sbjct: 137 YVSLLQLVFVFCYFIYLFTVYYIYYSVHEASIINFGYTLAKFMIFTSTCIY 187


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 134 NCCLRFLYSCIHYIICSLLFSIY 202
           N C +FLY+C H  +  ++ S Y
Sbjct: 140 NYC-QFLYNCFHSTLLLMILSRY 161


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 324 AKSIYFGSLRCNSCKASYSSFFFVLYN 404
           A   +FG+  C  CK    SFF   YN
Sbjct: 12  AAGFHFGAFTCEGCK----SFFGRTYN 34


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 92  ITLKKCVINIILTLNCCLRFLYSCIHYIICSLLFSIY 202
           I LK  +  +I+ +    +FLY  + Y+I   + S Y
Sbjct: 121 ILLKSVLEIVIIDIEIYSQFLYGFMIYLILDTIKSKY 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,481
Number of Sequences: 336
Number of extensions: 4072
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)