Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.73 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.9  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    27   3.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   3.9  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   6.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   6.8  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   9.0  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    25   9.0  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    25   9.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   9.0  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -3

Query: 595 GANSNKYGIAAEKL-KVPLATIRNLVQALVYLILEGSKHNLSESDFRSSLALAGFSNDQQ 419
           G  + + G   E L   P+A IRN  ++  Y   EG  H +++S  R  +          
Sbjct: 721 GNETEQLGYIMEVLGPPPMALIRNSTRSKAYFDSEGKPHPITDSHNRLLV-------PST 773

Query: 418 DVMSKLYNTKKKELYEALQLLQRNDPK 338
              S+L NTK+    + L    + DPK
Sbjct: 774 RTFSQLLNTKQASFLDFLSKCLKWDPK 800


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 543  WPQYEILSKHSFI*YWREVSTIYQNLILDL 454
            W Q +++   +F  YWRE S +   L LD+
Sbjct: 1200 WFQVKMVMTRNFQSYWREPSILMSKLALDI 1229


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 50  CLIQFISEMNKVWYITLKKCVINIILTLNCCLRFLYSCIHYIICSLLFSIYNGFLL 217
           C I F+     +W     K ++ I+   +  L FL + + YI+ + +FS+   F L
Sbjct: 694 CNITFLGSHLCIWQ---PKILLGIMYVTDLVLFFLDTYLWYILVNTVFSVARSFFL 746


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 667 KLLHEHSVQVLIDFCKLAVEYINKGAN 587
           KLL+   V++++D C  A+ Y++ G N
Sbjct: 255 KLLYSEDVEIIVDAC-WAISYLSDGPN 280


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -3

Query: 634 IDFCKLAVE-YINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSESDFR 458
           +  C LA + Y+   +N NK  I  E  + P  + RNL  +L        K +   +  R
Sbjct: 39  LQHCLLADQNYLLNNSNKNKGSIIEENTRKPFQSARNLQTSL--------KTHPESAITR 90

Query: 457 SSLALAGFSNDQQDVMSK-LYNTKKKEL 377
             L  AGF N    +  K L+ ++K+ +
Sbjct: 91  YGLGYAGFGNGWTALKPKILFPSQKRRV 118


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = -3

Query: 682 QKDHLKLLHEHSVQVLIDFCKLAVEYIN---KGANSNKYGI-AAEKLKVPLATIRNLV-Q 518
           Q DH++ L EH   + ++   + V Y N    G   N Y + + E L+       N++  
Sbjct: 405 QLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEENDYTMFSYEDLEHEFGITANIIAN 464

Query: 517 ALVYL---ILEGSKHNLSESD 464
            + YL   +LE  K  LS+ +
Sbjct: 465 KIKYLENELLEREKRTLSKQE 485


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 322 KQNLYILDHYVVTVVRLHIVPSSLYYTIYS*HLADHLKNLP 444
           K+ L ++D Y+     L +V ++L   ++   L D+L+N+P
Sbjct: 754 KEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVP 794


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 562 EKLKVPLATIRNLVQALVYLILEGSKHNLSESDFRSSLALAG 437
           E ++VPL+  +N +   + LI    K+N+ +  F SS  + G
Sbjct: 94  ESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFSSSATVYG 135


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 132 NVKIMLITHFFSVIYQTLFISLINWIKH*RNQRVXHVP*STKD 4
           N KI  +TH    IY TL++  +  +KH       HVP S ++
Sbjct: 96  NPKIDSLTHVLQQIYTTLYVEFV--VKH---PLYTHVPPSAEE 133


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -3

Query: 514 LVYLILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKY 335
           L+ +ILE       +SD   ++           +MS++  T K+ LYE L+ L+ N PK+
Sbjct: 107 LLNVILEDQFATEKDSD-NGAVNYGALEAALNSLMSQV--TSKEILYEPLKDLEANYPKF 163

Query: 334 IDFAWRFEVQ 305
           +  A   E Q
Sbjct: 164 LKNAKETEKQ 173


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 232 SFALHEKETIINRKQKATNYIVDATVQEAKAAIQCQNNVNHTLLQCDI 89
           S +LH K  +   +    + ++  T  EA+A + CQ  V    L  ++
Sbjct: 638 SQSLHPKRILRKAQPHEVDQLIQKTQDEAQALLVCQAKVRQRKLPMEV 685


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 630 TSANWLWNTLI 598
           TSANW WN LI
Sbjct: 378 TSANWFWNFLI 388


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 415 VMSKLYNTKKKELYE 371
           VM+++YN K KELY+
Sbjct: 253 VMTRMYNQKNKELYK 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,343
Number of Sequences: 5004
Number of extensions: 64799
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)