Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891...    30   2.3  
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    29   3.1  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    29   3.1  
07_01_0601 + 4464745-4465010,4465274-4466582                           29   4.1  
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072...    29   5.4  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    28   7.1  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    28   7.1  
02_04_0305 - 21873195-21873788,21873878-21874019,21874597-218747...    28   7.1  

>02_05_0329 -
           27986261-27987372,27988632-27988638,27988999-27989128,
           27989157-27989216,27989318-27989970,27990056-27990526
          Length = 810

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 229 FALHEKETIINRKQKATNYIVDATVQEAK-AAIQCQNNVNHTLLQCDIPNLIHLTNKLDQ 53
           F L    +I +  Q    Y+ D+   E K A  QC   + H     ++PN+    +  D 
Sbjct: 27  FKLSPDGSISSLFQNFVTYVQDSVSTELKDARAQCLQKLKHLSDHFELPNVFDKRSIEDF 86

Query: 52  ALKESKSQXCT 20
            ++ +KS  CT
Sbjct: 87  LVRNAKSILCT 97


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 53  LIQFISEMNKVWYITLKKCVINIILTLNCCLRFLYSCIHYIICSLLFS 196
           +I  I   N  W + L   +  + + L+C   F YSCIH   CSL  S
Sbjct: 32  IIIIIHVNNLQWILALLPLIKALQMGLSCL--FWYSCIHLQTCSLWMS 77


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = -3

Query: 406 KLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVTMDFVTMRPKSF 227
           ++YN+  KE  +A Q   +     ++ + +++     RN+ E    +V M+    R    
Sbjct: 313 EMYNSACKEAIDAKQKAAQMHQMKMEESKKYQ---ELRNAEEEALALVQMEKAKCRAALE 369

Query: 226 ALHEKETIIN---RKQKATNYIVDATVQEAKAAIQCQNNVNHTLLQCDIPNLIHLTNKLD 56
           A    + I     +K+    +      +E K A +  NN +    +  I ++   T+K D
Sbjct: 370 AAEAAQRIAELEAQKRLRAEWKAKREAEERKRATEAMNNTDLRYRRYSIDDIEAATHKFD 429

Query: 55  QALK 44
           +ALK
Sbjct: 430 KALK 433


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 250 QNPLSPLVLFLHLNS*KQSALQ-TSKQNLYILDHYVVTVVRLHIVPSSL 393
           QNP   L L       ++SA+Q T   ++Y  DH+V+T     I P+S+
Sbjct: 19  QNPECHLRLRARQQRPQESAVQSTLSSSIYFSDHFVLTPPPFQITPTSI 67


>02_04_0307 -
           21905897-21906490,21906581-21906722,21907116-21907247,
           21907303-21907433,21908028-21908185,21908299-21908396,
           21908511-21908631,21908748-21908965,21909230-21909429
          Length = 597

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 439 GFSNDQQDVMS-KLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQ 305
           GFS++  +++   +YNT K+   +A+ L +RN   +I  +W F V+
Sbjct: 361 GFSSECVEILFYAVYNTSKQIAEKAMPLQKRNAVDHIAESWWFTVR 406


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +3

Query: 219 CKAKLLGLIVTKSIVTTGFIPSFEFLEAICTSNLQAKSIYFGSLRCNSCKASYSSFFFVL 398
           C + LL L  T  + T G +PS   L+    ++  A+S  F       C  SYS   FV 
Sbjct: 67  CSSSLLSL--TPCLETIGDVPSTSSLQTEPAADHHARSCTFSDGIIYICFHSYSQ--FVP 122

Query: 399 YNLLITSC 422
           +++L + C
Sbjct: 123 FHILTSHC 130


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = -3

Query: 484 HNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW--RFE 311
           + LS S F+    L+G S+D Q  +  +    K +  +ALQ+ + +D    D AW  R E
Sbjct: 373 YGLSWSIFKEGHLLSG-SDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHE 431

Query: 310 VQIASRNSNEGIKPVVTMDFVTMRP-KSFALHEKE 209
               S   +  +        V+ +P +S A H+ E
Sbjct: 432 YLFGSVGDDHNLLIWDLRSPVSTKPVQSVAAHQGE 466


>02_04_0305 -
           21873195-21873788,21873878-21874019,21874597-21874782,
           21874911-21875058,21875172-21875269,21875384-21875469,
           21875741-21875825,21879298-21879478,21879682-21879874,
           21881429-21881566,21881892-21881900
          Length = 619

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 439 GFSNDQQDVMS-KLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQ 305
           GFS++  +++   +YNT K+   +A+ L +RN   +I  +W F V+
Sbjct: 383 GFSSECVEILFYAIYNTSKQIAEKAVPLQKRNVVDHIAESWWFTVR 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,187
Number of Sequences: 37544
Number of extensions: 341878
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)