Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   3.4  
AY146727-1|AAO12087.1|  139|Anopheles gambiae odorant-binding pr...    25   3.4  
AY745211-1|AAU93478.1|   86|Anopheles gambiae cytochrome P450 pr...    24   4.5  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   7.8  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -3

Query: 595 GANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSESDFRSSLALAGFSNDQQD 416
           GA++    I A+K+K+       L   L +++    KHN        ++   G  ND   
Sbjct: 564 GADTFVEMIKAKKIKLDHELPTLLETELGWIVSGAYKHNNLNQSMACTIVSQGGENDIAS 623

Query: 415 VMSKLYNTKK 386
           +M+  +N ++
Sbjct: 624 LMNTFFNIEE 633


>AY146727-1|AAO12087.1|  139|Anopheles gambiae odorant-binding
           protein AgamOBP20 protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
 Frame = -3

Query: 694 VF*LQKDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQA 515
           +F L+K+ +    E    V +   K+A E +N G   +K+    E LK  +  +  ++Q 
Sbjct: 17  IFPLRKEQMMKSGEMIRSVCLGKTKVAEELVN-GLRESKFADVKE-LKCYVNCVMEMMQT 74

Query: 514 LVYLILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKEL---YEALQLLQRND 344
           +    L     ++ + D      LAG      D+   + +  K      Y  LQ L +N+
Sbjct: 75  MKKGKLNYDA-SVKQIDTIMPDELAGPMRAALDICRTVADGIKNNCDAAYVLLQCLSKNN 133

Query: 343 PKYI 332
           PK+I
Sbjct: 134 PKFI 137


>AY745211-1|AAU93478.1|   86|Anopheles gambiae cytochrome P450
           protein.
          Length = 86

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 319 RFEVQIASRNSNEGIKPVVTMDFVTMRPKSFAL 221
           +FE+ +A  +  + IKP++ M  V   P    L
Sbjct: 54  KFELTLAEADQQDAIKPILKMITVPSAPVKLCL 86


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  GTXLTL*FL*CLIQFISEMNKVWYITLKKCVINIILTL 133
           G  L L  L CLIQ  + M   W++      IN + +L
Sbjct: 851 GYHLDLFVLACLIQICTMMGLPWFVAATVLSINHVNSL 888


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,419
Number of Sequences: 2352
Number of extensions: 14775
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)