Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17b02
(765 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093077-1|AAH93077.1| 169|Homo sapiens COMMD2 protein protein. 105 2e-22
BC046131-1|AAH46131.1| 199|Homo sapiens COMM domain containing ... 105 2e-22
AY542158-1|AAS22240.1| 199|Homo sapiens COMMD2 protein. 105 2e-22
AF059618-1|AAG43117.1| 199|Homo sapiens My004 protein protein. 105 2e-22
BC022898-1|AAH22898.1| 195|Homo sapiens COMM domain containing ... 38 0.052
AY542159-1|AAS22241.1| 195|Homo sapiens COMMD3 protein. 38 0.052
AL158211-3|CAI15951.1| 195|Homo sapiens COMM domain containing ... 38 0.052
AF201948-1|AAF17240.1| 195|Homo sapiens PIL protein protein. 38 0.052
CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein. 33 1.5
BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing ... 33 1.5
AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein. 33 1.5
BC022046-1|AAH22046.1| 190|Homo sapiens copper metabolism (Murr... 31 3.4
BC009266-1|AAH09266.2| 186|Homo sapiens COMMD1 protein protein. 31 3.4
AK223607-1|BAD97327.1| 190|Homo sapiens MURR1 variant protein. 31 3.4
AC116652-1|AAY24054.1| 94|Homo sapiens unknown protein. 31 3.4
AB178811-1|BAD18972.1| 190|Homo sapiens MURR1 protein. 31 3.4
>BC093077-1|AAH93077.1| 169|Homo sapiens COMMD2 protein protein.
Length = 169
Score = 105 bits (251), Expect = 2e-22
Identities = 54/141 (38%), Positives = 85/141 (60%)
Frame = -3
Query: 679 KDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLI 500
K+HL L + V+ +F ++AVE++ +GAN Y AA KL V T+++ V+ L YL+
Sbjct: 10 KEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQHGVEGLTYLL 69
Query: 499 LEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW 320
E SK +SE DF+ S+ + GFS + ++ +LY +KE+ L L + P Y + W
Sbjct: 70 TESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTLLSELAPSLPSYHNLEW 129
Query: 319 RFEVQIASRNSNEGIKPVVTM 257
R +VQ+ASR+ + IKP VT+
Sbjct: 130 RLDVQLASRSLRQQIKPAVTI 150
>BC046131-1|AAH46131.1| 199|Homo sapiens COMM domain containing 2
protein.
Length = 199
Score = 105 bits (251), Expect = 2e-22
Identities = 54/141 (38%), Positives = 85/141 (60%)
Frame = -3
Query: 679 KDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLI 500
K+HL L + V+ +F ++AVE++ +GAN Y AA KL V T+++ V+ L YL+
Sbjct: 10 KEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQHGVEGLTYLL 69
Query: 499 LEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW 320
E SK +SE DF+ S+ + GFS + ++ +LY +KE+ L L + P Y + W
Sbjct: 70 TESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTLLSELAPSLPSYHNLEW 129
Query: 319 RFEVQIASRNSNEGIKPVVTM 257
R +VQ+ASR+ + IKP VT+
Sbjct: 130 RLDVQLASRSLRQQIKPAVTI 150
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -3
Query: 127 QNNVNHT-LLQCDIPNLIHLTNKLDQALKESKSQXC 23
QN ++T +LQ D L+HL +L+QAL+E K+ C
Sbjct: 156 QNGDHNTKVLQTDPATLLHLVQQLEQALEEMKTNHC 191
>AY542158-1|AAS22240.1| 199|Homo sapiens COMMD2 protein.
Length = 199
Score = 105 bits (251), Expect = 2e-22
Identities = 54/141 (38%), Positives = 85/141 (60%)
Frame = -3
Query: 679 KDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLI 500
K+HL L + V+ +F ++AVE++ +GAN Y AA KL V T+++ V+ L YL+
Sbjct: 10 KEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQHGVEGLTYLL 69
Query: 499 LEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW 320
E SK +SE DF+ S+ + GFS + ++ +LY +KE+ L L + P Y + W
Sbjct: 70 TESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTLLSELAPSLPSYHNLEW 129
Query: 319 RFEVQIASRNSNEGIKPVVTM 257
R +VQ+ASR+ + IKP VT+
Sbjct: 130 RLDVQLASRSLRQQIKPAVTI 150
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -3
Query: 127 QNNVNHT-LLQCDIPNLIHLTNKLDQALKESKSQXC 23
QN ++T +LQ D L+HL +L+QAL+E K+ C
Sbjct: 156 QNGDHNTKVLQTDPATLLHLVQQLEQALEEMKTNHC 191
>AF059618-1|AAG43117.1| 199|Homo sapiens My004 protein protein.
Length = 199
Score = 105 bits (251), Expect = 2e-22
Identities = 54/141 (38%), Positives = 85/141 (60%)
Frame = -3
Query: 679 KDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLI 500
K+HL L + V+ +F ++AVE++ +GAN Y AA KL V T+++ V+ L YL+
Sbjct: 10 KEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQHGVEGLTYLL 69
Query: 499 LEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW 320
E SK +SE DF+ S+ + GFS + ++ +LY +KE+ L L + P Y + W
Sbjct: 70 TESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILSELAPSLPSYHNLEW 129
Query: 319 RFEVQIASRNSNEGIKPVVTM 257
R +VQ+ASR+ + IKP VT+
Sbjct: 130 RLDVQLASRSLRQQIKPAVTI 150
Score = 33.1 bits (72), Expect = 1.1
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -3
Query: 127 QNNVNHT-LLQCDIPNLIHLTNKLDQALKESKSQXC 23
QN ++T +LQ D L+HL +L+QAL+E K+ C
Sbjct: 156 QNGDHNTKVLQTDPATLLHLVQQLEQALEEMKTNHC 191
>BC022898-1|AAH22898.1| 195|Homo sapiens COMM domain containing 3
protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.052
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -3
Query: 502 ILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFA 323
ILE KH +S + L F ++ ++ Y K L L + R+ P D +
Sbjct: 70 ILEAGKHRADKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLEILLGSIGRSLPHITDVS 129
Query: 322 WRFEVQIASRNSNEGIKP 269
WR E QI + + +P
Sbjct: 130 WRLEYQIKTNQLHRMYRP 147
>AY542159-1|AAS22241.1| 195|Homo sapiens COMMD3 protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.052
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -3
Query: 502 ILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFA 323
ILE KH +S + L F ++ ++ Y K L L + R+ P D +
Sbjct: 70 ILEAGKHRADKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLEILLGSIGRSLPHITDVS 129
Query: 322 WRFEVQIASRNSNEGIKP 269
WR E QI + + +P
Sbjct: 130 WRLEYQIKTNQLHRMYRP 147
>AL158211-3|CAI15951.1| 195|Homo sapiens COMM domain containing 3
protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.052
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -3
Query: 502 ILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFA 323
ILE KH +S + L F ++ ++ Y K L L + R+ P D +
Sbjct: 70 ILEAGKHRADKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLEILLGSIGRSLPHITDVS 129
Query: 322 WRFEVQIASRNSNEGIKP 269
WR E QI + + +P
Sbjct: 130 WRLEYQIKTNQLHRMYRP 147
>AF201948-1|AAF17240.1| 195|Homo sapiens PIL protein protein.
Length = 195
Score = 37.5 bits (83), Expect = 0.052
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -3
Query: 502 ILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFA 323
ILE KH +S + L F ++ ++ Y K L L + R+ P D +
Sbjct: 70 ILEAGKHRADKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLEILLGSIGRSLPHITDVS 129
Query: 322 WRFEVQIASRNSNEGIKP 269
WR E QI + + +P
Sbjct: 130 WRLEYQIKTNQLHRMYRP 147
>CR533452-1|CAG38483.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/129 (17%), Positives = 51/129 (39%)
Frame = -3
Query: 649 SVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSE 470
SV++ + ++ E + +G + K K ++ V L +++ +KH++
Sbjct: 27 SVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDG 86
Query: 469 SDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRN 290
S L G + + + Y K+ L + L++ + WR + ++S
Sbjct: 87 ESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSL 146
Query: 289 SNEGIKPVV 263
+P+V
Sbjct: 147 LQSVEEPMV 155
>BC068998-1|AAH68998.1| 199|Homo sapiens COMM domain containing 4
protein.
Length = 199
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/129 (17%), Positives = 51/129 (39%)
Frame = -3
Query: 649 SVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSE 470
SV++ + ++ E + +G + K K ++ V L +++ +KH++
Sbjct: 27 SVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDG 86
Query: 469 SDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRN 290
S L G + + + Y K+ L + L++ + WR + ++S
Sbjct: 87 ESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSL 146
Query: 289 SNEGIKPVV 263
+P+V
Sbjct: 147 LQSVEEPMV 155
>AY542160-1|AAS22242.1| 199|Homo sapiens COMMD4 protein.
Length = 199
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/129 (17%), Positives = 51/129 (39%)
Frame = -3
Query: 649 SVQVLIDFCKLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALVYLILEGSKHNLSE 470
SV++ + ++ E + +G + K K ++ V L +++ +KH++
Sbjct: 27 SVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDG 86
Query: 469 SDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRN 290
S L G + + + Y K+ L + L++ + WR + ++S
Sbjct: 87 ESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSL 146
Query: 289 SNEGIKPVV 263
+P+V
Sbjct: 147 LQSVEEPMV 155
>BC022046-1|AAH22046.1| 190|Homo sapiens copper metabolism (Murr1)
domain containing 1 protein.
Length = 190
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 439 GFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVT 260
G ++DQ V+SK + + K ++ E+L R + +WR + + SR+S + PV
Sbjct: 85 GITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAI 144
Query: 259 MD 254
++
Sbjct: 145 IE 146
>BC009266-1|AAH09266.2| 186|Homo sapiens COMMD1 protein protein.
Length = 186
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 439 GFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVT 260
G ++DQ V+SK + + K ++ E+L R + +WR + + SR+S + PV
Sbjct: 81 GITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAI 140
Query: 259 MD 254
++
Sbjct: 141 IE 142
>AK223607-1|BAD97327.1| 190|Homo sapiens MURR1 variant protein.
Length = 190
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 439 GFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVT 260
G ++DQ V+SK + + K ++ E+L R + +WR + + SR+S + PV
Sbjct: 85 GITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAI 144
Query: 259 MD 254
++
Sbjct: 145 IE 146
>AC116652-1|AAY24054.1| 94|Homo sapiens unknown protein.
Length = 94
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 439 GFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVT 260
G ++DQ V+SK + + K ++ E+L R + +WR + + SR+S + PV
Sbjct: 25 GITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAI 84
Query: 259 MD 254
++
Sbjct: 85 IE 86
>AB178811-1|BAD18972.1| 190|Homo sapiens MURR1 protein.
Length = 190
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 439 GFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVT 260
G ++DQ V+SK + + K ++ E+L R + +WR + + SR+S + PV
Sbjct: 85 GITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAI 144
Query: 259 MD 254
++
Sbjct: 145 IE 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,446,572
Number of Sequences: 237096
Number of extensions: 2064049
Number of successful extensions: 4198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4198
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -