Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061355-1|AAL28903.1|  233|Drosophila melanogaster LD28404p pro...    68   2e-11
AE014297-2467|AAF55515.1|  233|Drosophila melanogaster CG7168-PA...    68   2e-11
AY113374-1|AAM29379.1|  609|Drosophila melanogaster LP06948p pro...    29   7.0  
AE014297-1210|AAF54562.4| 1483|Drosophila melanogaster CG4509-PB...    29   7.0  
AE014134-1157|AAF52432.1|  992|Drosophila melanogaster CG11323-P...    29   7.0  

>AY061355-1|AAL28903.1|  233|Drosophila melanogaster LD28404p
           protein.
          Length = 233

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 7/225 (3%)
 Frame = -3

Query: 682 QKDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEK---LKVPLATIRNLVQAL 512
           Q++HL LL + +  V ++ CK A +Y+  G N ++Y + A+K   L  P A ++  V+AL
Sbjct: 10  QRNHLSLLQKPASAV-VELCKSAFDYLINGPNPSRYEMLAKKSSDLGSPEA-VQQAVEAL 67

Query: 511 VYLILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKL--YNTKKKELYE-ALQLLQRNDP 341
           + L++  +    S S    ++    F     DV+  L  + T K+   E +++       
Sbjct: 68  ISLLISVTTRVGSSSVDMEAILRQTFPELGDDVIEVLEQFVTSKRNFVEGSIKSANIRAY 127

Query: 340 KYIDFAWRFEVQIASRNSNEGIKPVVTMDFVTMRPKSFALHEKETIINRKQKATNYIVDA 161
           + ++  WR EV+ ASR+  +  + VVTM           LH +    NR+  A + I   
Sbjct: 128 RLVNLDWRLEVRTASRSLLDQCQVVVTMKLY--------LHTEPKNENRELLAVD-ISGR 178

Query: 160 TVQEAKAAIQCQN-NVNHTLLQCDIPNLIHLTNKLDQALKESKSQ 29
           + QE KA  + +  +    L+Q D+ +L+H+   L+ AL ESK++
Sbjct: 179 SEQELKAMQEDERLHRKDLLVQTDVCSLVHMIKTLEDALAESKTR 223


>AE014297-2467|AAF55515.1|  233|Drosophila melanogaster CG7168-PA
           protein.
          Length = 233

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 7/225 (3%)
 Frame = -3

Query: 682 QKDHLKLLHEHSVQVLIDFCKLAVEYINKGANSNKYGIAAEK---LKVPLATIRNLVQAL 512
           Q++HL LL + +  V ++ CK A +Y+  G N ++Y + A+K   L  P A ++  V+AL
Sbjct: 10  QRNHLSLLQKPASAV-VELCKSAFDYLINGPNPSRYEMLAKKSSDLGSPEA-VQQAVEAL 67

Query: 511 VYLILEGSKHNLSESDFRSSLALAGFSNDQQDVMSKL--YNTKKKELYE-ALQLLQRNDP 341
           + L++  +    S S    ++    F     DV+  L  + T K+   E +++       
Sbjct: 68  ISLLISVTTRVGSSSVDMEAILRQTFPELGDDVIEVLEQFVTSKRNFVEGSIKSANIRAY 127

Query: 340 KYIDFAWRFEVQIASRNSNEGIKPVVTMDFVTMRPKSFALHEKETIINRKQKATNYIVDA 161
           + ++  WR EV+ ASR+  +  + VVTM           LH +    NR+  A + I   
Sbjct: 128 RLVNLDWRLEVRTASRSLLDQCQVVVTMKLY--------LHTEPKNENRELLAVD-ISGR 178

Query: 160 TVQEAKAAIQCQN-NVNHTLLQCDIPNLIHLTNKLDQALKESKSQ 29
           + QE KA  + +  +    L+Q D+ +L+H+   L+ AL ESK++
Sbjct: 179 SEQELKAMQEDERLHRKDLLVQTDVCSLVHMIKTLEDALAESKTR 223


>AY113374-1|AAM29379.1|  609|Drosophila melanogaster LP06948p
           protein.
          Length = 609

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 493 GSKHNLSESDFRSSLALAGFSNDQQDV---MSKLYNTKKKEL 377
           GSK +L++  ++S   LAG  +++++V   M   YN KK  +
Sbjct: 335 GSKRSLTDRSYQSETELAGLEHEERNVPKYMEWYYNKKKSSV 376


>AE014297-1210|AAF54562.4| 1483|Drosophila melanogaster CG4509-PB
            protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 493  GSKHNLSESDFRSSLALAGFSNDQQDV---MSKLYNTKKKEL 377
            GSK +L++  ++S   LAG  +++++V   M   YN KK  +
Sbjct: 1209 GSKRSLTDRSYQSETELAGLEHEERNVPKYMEWYYNKKKSSV 1250


>AE014134-1157|AAF52432.1|  992|Drosophila melanogaster CG11323-PA
           protein.
          Length = 992

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 594 EPTQTSMESLLKNLKFHWPQYEI 526
           EP   S  SL+  +K HWPQY +
Sbjct: 389 EPMVKSCLSLVDKMKVHWPQYSL 411


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,129,952
Number of Sequences: 53049
Number of extensions: 634315
Number of successful extensions: 1583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)