Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17b02
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    32   0.39 
U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    30   2.1  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
            protein K02F6.4 protein.
          Length = 1193

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -3

Query: 604  INKGANSNKYGIAAEKLKVPL--ATIRNLVQALVYLILEGSKHNLSESDFRSSLALAGFS 431
            ++  A+ N Y   +     PL  A  RNLVQ + YL+  G+  +  +S+++    LA  +
Sbjct: 860  VDNSADVNAYSCHSNYYSTPLHMAVTRNLVQFVAYLLKNGADPSKMDSNYQLPAKLAEKT 919

Query: 430  NDQQDVMSKL--YNTKKK 383
              ++++++    Y+  KK
Sbjct: 920  EKKEELLAMFNKYSRGKK 937


>U80026-3|AAC25845.2|  354|Caenorhabditis elegans Hypothetical
           protein EGAP9.3 protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 110 VINIILTLNCCLRFLYS--CIHYIICSLLFSIYNGFLLM*GKALRS 241
           +I+I + +    RFLYS  C HY   SLL    N FL++ G+  +S
Sbjct: 121 IISIPIEIAESTRFLYSPACCHYQFASLLSCEQNRFLIIDGQYFQS 166


>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -3

Query: 415 VMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVTMDFVTMRP 236
           V  ++ N K +E Y     +    P +IDF    E    + N NE I    T  +     
Sbjct: 84  VQKQISNKKTREFYGVPITIV---PGFIDFWKSSEFSNENLNPNEQISIFKTFLYDPTEN 140

Query: 235 KSFALHEKETIINRKQKATNY 173
           K+ +    E +IN  + +TNY
Sbjct: 141 KALSFDGNEEVININRPSTNY 161


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = -3

Query: 415 VMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVTMDFVTMRP 236
           V  ++ N K +E Y     +    P +IDF    E    + N NE I    T  +     
Sbjct: 250 VQKQISNKKTREFYGVPITIV---PGFIDFWKSSEFSNENLNPNEQISIFKTFLYDPTEN 306

Query: 235 KSFALHEKETIINRKQKATNY 173
           K+ +    E +IN  + +TNY
Sbjct: 307 KALSFDGNEEVININRPSTNY 327


>Z70780-8|CAA94825.2|  266|Caenorhabditis elegans Hypothetical
           protein F46B6.9 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 153 CTVASTI*FVAFCFLFIMVSFSCKAKLLGLIVTKSIVTTGFIPSFEF 293
           C V  TI  V F  L +   +SC+AK +  ++   I ++ F+  F F
Sbjct: 67  CVVLVTILHVMFTCLSLYGIYSCRAKFMKPLIVDIITSSIFLLIFVF 113


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 GKALRSHCNKIHCHHWFYSFI 286
           GK      + I  HHWFYSFI
Sbjct: 48  GKPYLEQISSICQHHWFYSFI 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,635
Number of Sequences: 27780
Number of extensions: 349546
Number of successful extensions: 1129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)