Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a23
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   2.4  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.2  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   4.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.3  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   7.3  

>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 161 FPFSSPIDCPTSILLTLLLPWPIAKPLSSSRIICSEFLSNL--VIW 292
           +PF   I     I+LTL+  W + KP ++   + +  L  L  VIW
Sbjct: 436 YPFPQLIGFVIGIILTLVQGWTVFKPFAAGDFVDAYILLPLFFVIW 481


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 125 VMSPLATSNSDNFPFSSPIDCPTSILLTLLLPWPIAKPLSSSRIICSEFLSNLVI 289
           ++S    S S + P ++ +   +SIL    +P     P +SS    S  LSN  I
Sbjct: 85  ILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTI 139


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 450 PRTILDLVHLESVFDVLELYLWLSYRFP 367
           P T  +L  LE +  ++  Y+W S R+P
Sbjct: 592 PTTETELQQLEQLHKLIVAYMWASIRYP 619


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 732 HATLSSLMDIFVHLCT--VDDSLYFMCNTEG 646
           +A +S   DIFV +CT   DD    +C+T G
Sbjct: 630 NAEVSEWKDIFVFICTYATDDEFAPLCSTLG 660


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 491 RVMGSLRLYCLTIFRKVAQT 550
           R+ GSL+L+CL+I ++  QT
Sbjct: 476 RLAGSLQLFCLSIIKRWNQT 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,438
Number of Sequences: 5004
Number of extensions: 63930
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)