Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a23
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504 99 4e-21
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 43 3e-04
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 33 0.27
11_08_0006 - 27548581-27549177 31 1.1
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 30 1.9
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106... 30 1.9
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.9
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 29 4.4
03_04_0113 + 17382370-17382714 29 4.4
04_04_1038 - 30319139-30319357,30319544-30319714,30319803-303198... 29 5.8
03_06_0700 + 35616619-35617069,35619123-35619502 29 5.8
11_05_0086 + 18964493-18965737,18965896-18966360 28 7.6
08_01_0480 + 4219844-4220188,4221101-4221250 28 7.6
>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
Length = 725
Score = 99.1 bits (236), Expect = 4e-21
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = -1
Query: 810 QPPEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLA 631
QP E + GL P EQ+E +A P T + L+D F C V DS YFMC+ E K +A
Sbjct: 497 QPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRV-DSTYFMCHQESIKKVA 555
Query: 630 EMIQHVP-LPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLP 454
M++ + L L+ RY FC AP+N + P L+ YS++ + S + P
Sbjct: 556 NMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRV-----SIAMGMPKG 610
Query: 453 SPRTILDLVHLESVFDVLELYLWLSYRF-PDMFPDVKLVRDMETELDAIIQQGI 295
S + +L+ LE+ VL +YLWLS+ F D FP V+ +M + ++ + +
Sbjct: 611 SAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSL 664
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -1
Query: 459 LPSPRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMET 325
L P++ L LES+ VLELY+WLS+R D +PD +L ++
Sbjct: 554 LQVPKSHNQLKELESIHKVLELYVWLSFRLEDSYPDRELAASQKS 598
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = -1
Query: 354 DVKLVRDMETELDAIIQQGIFQITRLLRNSEQMIRDEDSGF-AIGHGSKRVNKMLVGQSM 178
++ LV++ ++ + +++ +L +SEQ+++DE + ++ G K K+++ M
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSLNEGLK--EKLII---M 851
Query: 177 GEEKGKLSELLVAR 136
EE KLSE++VA+
Sbjct: 852 AEESTKLSEIIVAK 865
>11_08_0006 - 27548581-27549177
Length = 198
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 244 GQWLCDRPRQQEG**DAGRTINGRGEGKIVGITSCQGTHNAADVEETSART 92
GQW R +QQ D GR+I+G EG++ Q + + AD +RT
Sbjct: 85 GQWWHQRGQQQFPGNDGGRSIDGIDEGRVCN-RQTQASRSVADNRGDDSRT 134
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 22 TPSHNLFSSVPILFRSVYLLVGGEFLLKF 108
T ++++F +P+LFR ++ GEF+ KF
Sbjct: 183 TENYSIFMDLPLLFRPKEMVKNGEFIYKF 211
>01_05_0723 +
24607800-24608357,24609616-24610158,24610281-24610697,
24610804-24611244
Length = 652
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -1
Query: 333 METELDAIIQQGIFQITRLLRNSEQMIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKL- 157
M E ++ +GI++ + + EQ++ E + HG +R L G S+G L
Sbjct: 365 MFEETGVLVHRGIYEAAKGIY--EQLM-PEIAAHLAAHG-ERARLRLTGHSLGGSLALLV 420
Query: 156 SELLVARGLITPQML 112
S +LVARG++ P+ L
Sbjct: 421 SLMLVARGVVGPEAL 435
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 810 QPPEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFM 661
+PP PV H M L P+A L L+D+ V + L F+
Sbjct: 175 RPPRPVEADASHAVGGYMSLLMLRAPYAVLKDLLDVGVKRIGIATVLVFL 224
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 529 NGETVQSQRAHHPELAERHSGVAAALS 449
NG V S+ HHP + RH G A L+
Sbjct: 192 NGTFVNSRAVHHPNVGSRHWGEPAELA 218
>03_04_0113 + 17382370-17382714
Length = 114
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 136 GTHNAADVEETSARTLHRQEDRQ 68
G H AAD EETS R + RQ R+
Sbjct: 2 GRHEAADPEETSGRRIQRQGVRE 24
>04_04_1038 -
30319139-30319357,30319544-30319714,30319803-30319850,
30319978-30320166
Length = 208
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 773 PPPSRWSCTPTXCPTPLSA 717
PPP RW C CP P+SA
Sbjct: 22 PPPRRW-CRSPLCPLPVSA 39
>03_06_0700 + 35616619-35617069,35619123-35619502
Length = 276
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 518 STVATSPSPGTG*AAQWSGRCPLLGPYSTSCTWNLSLTS 402
S A SP PG S R PLL P ++ TW LS+ S
Sbjct: 8 SVAAISPLPGASLPRPVSARVPLL-PRASPPTWRLSVGS 45
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 791 RRPACTPPPSRWSCTPTXC 735
R P +PPP R SC+P C
Sbjct: 227 RSPLLSPPPPRRSCSPQGC 245
>08_01_0480 + 4219844-4220188,4221101-4221250
Length = 164
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 448 RRGQRPLHCAAQPVPGDG-LVATVLSHHFQEGSTNER*LVIDGRATEHVA 594
RR +RP H PVPG G + S F GS R L + A E A
Sbjct: 28 RRRRRPAHAHRLPVPGAGSAIRLACSSPFLGGSNGSRSLKHNAAAGEKSA 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,389,741
Number of Sequences: 37544
Number of extensions: 492721
Number of successful extensions: 1598
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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