Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17a23
         (810 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY341177-1|AAR13741.1|  230|Anopheles gambiae ferredoxin reducta...    25   2.8  
AY341176-1|AAR13740.1|  230|Anopheles gambiae ferredoxin reducta...    25   2.8  
AY341175-1|AAR13739.1|  230|Anopheles gambiae ferredoxin reducta...    25   2.8  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    24   4.8  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   6.4  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    23   8.4  

>AY341177-1|AAR13741.1|  230|Anopheles gambiae ferredoxin reductase
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 178 GRGEGKIVGITSCQGTHNAADVEETSA--RTLHRQE 77
           G+G G+++G++SCQ     A   E S+  + LH+++
Sbjct: 185 GKG-GRVIGMSSCQRDPVVAQFAEYSSQGKVLHKED 219


>AY341176-1|AAR13740.1|  230|Anopheles gambiae ferredoxin reductase
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 178 GRGEGKIVGITSCQGTHNAADVEETSA--RTLHRQE 77
           G+G G+++G++SCQ     A   E S+  + LH+++
Sbjct: 185 GKG-GRVIGMSSCQRDPVVAQFAEYSSQGKVLHKED 219


>AY341175-1|AAR13739.1|  230|Anopheles gambiae ferredoxin reductase
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 178 GRGEGKIVGITSCQGTHNAADVEETSA--RTLHRQE 77
           G+G G+++G++SCQ     A   E S+  + LH+++
Sbjct: 185 GKG-GRVIGMSSCQRDPVVAQFAEYSSQGKVLHKED 219


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 803 PSRSRRPACTPPPSRWSCTPTXCPTPLSAV*WTYSFTCAR 684
           P  +  P  TP P+   C PT    P     W +   C+R
Sbjct: 272 PPTTSEPPSTPHPTDPHCPPTGATLPNY---WAHGTDCSR 308


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 258  MIRDEDSGFAIGHGSKRVNKMLVGQSMGEEKGKLSELLVAR 136
            ++RD DS   I  G+KR+   L  ++  EE+  L+  ++ R
Sbjct: 1049 LLRDADSWSRICEGAKRITAQL-QRAWDEERAALAVNVIER 1088


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 405 VLELYLWLSYRFPDM 361
           VL LYL +SYR PD+
Sbjct: 640 VLSLYLIVSYRKPDV 654


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,811
Number of Sequences: 2352
Number of extensions: 17058
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)