Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17a23
(810 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-l... 256 7e-68
AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-l... 256 7e-68
AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent ... 256 7e-68
AK128065-1|BAC87257.1| 821|Homo sapiens protein ( Homo sapiens ... 31 4.9
AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated gua... 31 6.5
>BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-like 1
(S. cerevisiae) protein.
Length = 786
Score = 256 bits (627), Expect = 7e-68
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 17/256 (6%)
Frame = -1
Query: 810 QPPEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLA 631
+P +P+ AGLHPT+EQ+E++AYH P ATLS+L+DIFV VD YF+CN + FKF A
Sbjct: 500 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQ-YFVCNMDDFKFSA 558
Query: 630 EMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPS 451
E+IQH+PL LR RYVFC APIN K PFVC++ L+ RQYSRNEP+T WL ++WPL
Sbjct: 559 ELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLP 618
Query: 450 PRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLR 271
P+ I DL+ LE+V DVL+LYLWLSYRF DMFPD L+RD++ ELD IIQ G+ IT+L++
Sbjct: 619 PKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIK 678
Query: 270 NSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM---GEEKGKLS--ELLV 142
SE GF G S+ R K L ++ + G+LS LV
Sbjct: 679 MSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLV 738
Query: 141 ARGLITPQMLKKLQQE 94
+GL+TP MLK+L++E
Sbjct: 739 QQGLLTPDMLKQLEKE 754
>AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-like 1
(S. cerevisiae) protein.
Length = 786
Score = 256 bits (627), Expect = 7e-68
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 17/256 (6%)
Frame = -1
Query: 810 QPPEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLA 631
+P +P+ AGLHPT+EQ+E++AYH P ATLS+L+DIFV VD YF+CN + FKF A
Sbjct: 500 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQ-YFVCNMDDFKFSA 558
Query: 630 EMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPS 451
E+IQH+PL LR RYVFC APIN K PFVC++ L+ RQYSRNEP+T WL ++WPL
Sbjct: 559 ELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLP 618
Query: 450 PRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLR 271
P+ I DL+ LE+V DVL+LYLWLSYRF DMFPD L+RD++ ELD IIQ G+ IT+L++
Sbjct: 619 PKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIK 678
Query: 270 NSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM---GEEKGKLS--ELLV 142
SE GF G S+ R K L ++ + G+LS LV
Sbjct: 679 MSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLV 738
Query: 141 ARGLITPQMLKKLQQE 94
+GL+TP MLK+L++E
Sbjct: 739 QQGLLTPDMLKQLEKE 754
>AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent
mitochondrial RNA helicase protein.
Length = 786
Score = 256 bits (627), Expect = 7e-68
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 17/256 (6%)
Frame = -1
Query: 810 QPPEPVTQAGLHPTSEQMELYAYHXPHATLSSLMDIFVHLCTVDDSLYFMCNTEGFKFLA 631
+P +P+ AGLHPT+EQ+E++AYH P ATLS+L+DIFV VD YF+CN + FKF A
Sbjct: 500 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQ-YFVCNMDDFKFSA 558
Query: 630 EMIQHVPLPLRARYVFCCAPINNKLPFVCATFLKMVRQYSRNEPITRNWLSGTVEWPLPS 451
E+IQH+PL LR RYVFC APIN K PFVC++ L+ RQYSRNEP+T WL ++WPL
Sbjct: 559 ELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLP 618
Query: 450 PRTILDLVHLESVFDVLELYLWLSYRFPDMFPDVKLVRDMETELDAIIQQGIFQITRLLR 271
P+ I DL+ LE+V DVL+LYLWLSYRF DMFPD L+RD++ ELD IIQ G+ IT+L++
Sbjct: 619 PKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIK 678
Query: 270 NSEQMIRDEDSGFAIGHGSK------------RVNKMLVGQSM---GEEKGKLS--ELLV 142
SE GF G S+ R K L ++ + G+LS LV
Sbjct: 679 MSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLV 738
Query: 141 ARGLITPQMLKKLQQE 94
+GL+TP MLK+L++E
Sbjct: 739 QQGLLTPDMLKQLEKE 754
>AK128065-1|BAC87257.1| 821|Homo sapiens protein ( Homo sapiens
cDNA FLJ46185 fis, clone TESTI4004917, moderately
similar to Dynein beta chain, ciliary. ).
Length = 821
Score = 31.1 bits (67), Expect = 4.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 809 SRPSRSRRPACTPPPSRWSCTPTXC 735
S PSRS RP+C+P P R S T C
Sbjct: 792 STPSRSSRPSCSPWPGRTSGPWTRC 816
>AF257238-1|AAG24545.1| 1150|Homo sapiens membrane-associated
guanylate kinase MAGI3 protein.
Length = 1150
Score = 30.7 bits (66), Expect = 6.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 593 RARSGNGTCCIISAKNLNPS 652
R G GTCCI+S K NPS
Sbjct: 49 REEPGGGTCCIVSGKAPNPS 68
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,550,941
Number of Sequences: 237096
Number of extensions: 2518668
Number of successful extensions: 7390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7381
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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